Array 1 42098-44450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQQB01000016.1 Streptococcus suis EA1832.92 Contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 42098 36 100.0 30 .................................... AACTAAAGCTAACTACAAACGTGAATTTTA 42164 36 100.0 30 .................................... TAAGAAAGCCCCAGACGCAGTTGCAGCAGG 42230 36 100.0 30 .................................... AATTTTGAATTTCTGCTGAGAGGAAGCTAG 42296 36 100.0 30 .................................... AGTTAACGGTCAGAGCGTATGGTCGTACGA 42362 36 100.0 30 .................................... AAGGTATAGACTTGCATTCCTCTATCCACT 42428 36 100.0 31 .................................... TGGAGGGGTGTTGAAAGCGGGGAGTAGGTGT 42495 36 100.0 30 .................................... AGAAAGCTGTATCAGAAAGACCTTCCTTCT 42561 36 100.0 30 .................................... TTAGAGACTTTGTCAGCCACCTTTTTTTCA 42627 36 100.0 29 .................................... TTTATTTGATTGAGGAGGACTAATGGACG 42692 36 100.0 30 .................................... TCCCTGTGTAGATTTGATTATTGCCTGTTT 42758 36 100.0 30 .................................... ACTAAAGCTAACTACAAACGTGAATTTTAC 42824 36 100.0 30 .................................... TTCCGTTCTTGTTTTTATTGTTGCCGCCGC 42890 36 100.0 30 .................................... TGAGCTGGCAATCCTCAATCAACTCATCCA 42956 36 100.0 30 .................................... TCTATCTCACTCACGAAAGCAAAGACGCAA 43022 36 100.0 30 .................................... TAAACCATAGGAAGCTGCACTGCCTGTTTT 43088 36 100.0 30 .................................... CTCTAGTGACCTTGAAATTGGTCAGATTGT 43154 36 100.0 30 .................................... CTACAGCTTCTGCGTTACGTTTACGGACTT 43220 36 100.0 30 .................................... TTTGATGATGTTGGCAAATTCTTCCTCTGG 43286 36 100.0 30 .................................... AATCACACCATTCGCAATTCCCGAACTTAA 43352 36 100.0 30 .................................... TTTCATCGAGTAGACTTTTAATGATATTCA 43418 36 100.0 30 .................................... TGCGGCTAAAAAAATACCCGCGACCACCGG 43484 36 100.0 30 .................................... TGTGGAAGCGCACAATGCAGAAGTTCGCAA 43550 36 100.0 30 .................................... TTACAGACTCCCCATTCACTAACTTCAATT 43616 36 100.0 30 .................................... ATTATGGTGCTGATGCTGTCTTCGTTGGGG 43682 36 100.0 30 .................................... TAAATTGTTTGAGTCCTACAAAATGTTGGA 43748 36 100.0 29 .................................... GGCTTCTTTAGCTTCTGGTTAAGTTTATA 43813 36 100.0 30 .................................... TCATTCGGCGATAAGTTAATGATTAAATAA 43879 36 100.0 29 .................................... TGAAAGTTGAAAATGCGGAGAAGAAATCT 43944 36 100.0 30 .................................... ATACTCTCTCTTTTGTCAATGTAGCAGACG 44010 36 100.0 30 .................................... CATTGGAACAAAAGCAAGCTATCTTGAATC 44076 36 97.2 30 .....................T.............. CTAGGTGCTGTAATTGATAAAAGTGAACTA 44142 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 44215 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [44221] 44283 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 44349 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 44415 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ===================================== ================== 36 36 98.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGATTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : CTCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAATAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATATTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //