Array 1 76905-78399 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBZ01000001.1 Streptococcus mutans strain UAB-20 NODE_1_length_1169142_cov_16.859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 76905 28 100.0 33 ............................ TGATACACCGTGAAACTGCGATTATCTCCCACA 76966 28 100.0 33 ............................ TGAACAGCACGCGCCAATTCATCAGGTCTTTCA 77027 28 100.0 33 ............................ TATTTTGCATATTTTTGTTCCATCTTCTGAACA 77088 28 100.0 33 ............................ TACCACGATACATGGGTCGATAAATTGGGGATT 77149 28 100.0 34 ............................ TGTTCGTAAGGGCTGCTATCTAACAAAGACTCGA 77211 28 100.0 33 ............................ CGGTTGGATATTCTTTCAAAATCTCGTTAGATG G [77233] 77273 28 100.0 33 ............................ TCAGTGAAAGCACAAAAGCTATGCTGATGGAAC 77334 28 100.0 33 ............................ TAATATACTCTGCCATACCACCTTCTGCCAGTG 77395 28 100.0 33 ............................ TATCATGATACTGATTATCAGCCGAGTGATTTG 77456 28 100.0 33 ............................ CAGTAAAGGAGGATACTGATTAATGTTAAATAA 77517 28 100.0 33 ............................ TAAGTTCATCATGATGTTCTCCTATGAATTTTC 77578 28 100.0 33 ............................ TGGCTTGAGGTAATGTTTTTAGTCTATTTTTCA 77639 28 100.0 33 ............................ TGCACCGAGATGCGCGTGATTATAAAACGACAA 77700 28 100.0 33 ............................ TAATAGGTCATGATAACCTTGATTGTTTTAGCA 77761 28 100.0 33 ............................ TGACAGAATTAGTATGTATTCGGCCGGTCAAGA 77822 28 100.0 33 ............................ TAGACGAGTAAGGAATATTGAACTTCCAACAGA 77883 28 100.0 34 ............................ TATTACTCTATATTAGTAAATTGCAAATCTTATG 77945 28 100.0 33 ............................ CTAATATTTTTTTAAGTTTCATCGGTTATCCAC 78006 28 100.0 33 ............................ CGGCTTGACTTCAGTACAGCAAGAGCTTGCAAA 78067 28 100.0 33 ............................ TGCTATCCACTTATAATCAGCGGGATTTTGCGA 78128 28 100.0 33 ............................ ATTTACAGCTGACTCAATCAAGTCATTGATTTG 78189 28 100.0 33 ............................ TAACTGAACGATGAGAAATACAATGAAATAGAC 78250 28 100.0 33 ............................ TGGAAGGTCGTTAAAGTTAAAGCTGATTTGTGG 78311 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 78372 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179968-180597 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBZ01000001.1 Streptococcus mutans strain UAB-20 NODE_1_length_1169142_cov_16.859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 179968 36 100.0 30 .................................... TGACCGTTGATGGTGGAGCGGCACAAGGTT 180034 36 100.0 30 .................................... AAAATTTATTTTTGAATGTTTTATTTCATC 180100 36 100.0 30 .................................... GATAAAGCGAATGGCAATCTGAGATTTAAT 180166 36 100.0 30 .................................... TTTAGTGCCCCACATTTCAGAGGTAATTTC 180232 36 100.0 30 .................................... TCCATTATTAACTGGTATCCGTTGAATATT 180298 36 100.0 30 .................................... CGTACTATTATCGAACCAGCATCCAGTTGA 180364 36 100.0 30 .................................... TCGACTAATCTTTTTCTCATCTTGCGCAGT 180430 36 100.0 30 .................................... TTCATCTTGAGTTACTTTGCTATTACGCAT 180496 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 180562 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [180578] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CACATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //