Array 1 9290-9820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIJR010000100.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_100_length_20330_cov_23.371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9290 37 97.3 34 ...............................G..... GGACCTGGGACGACGTCTACCTGGAGATGGAGGA 9361 37 100.0 35 ..................................... CTATCTCAGGGCTCGAAGGTGTCTACGCTTACAGC 9433 37 100.0 35 ..................................... GATGTCCAATGGTGTGTCCCAATGGGGCGCGATTA 9505 37 100.0 33 ..................................... CCCATGGGTCATCGGGTGCAGGCTGTCCAAGAA 9575 37 100.0 32 ..................................... AGCGACAGGGAAACAAGGGGGTAATCCTAGTA 9644 37 89.2 33 ..T....A..G.G........................ CCAGATCCAGGCCCGATGGCTCCAGCTCCCGAG 9714 37 100.0 33 ..................................... AGCAGGAGGCCGCAACCGCCTCTGACATCATCG 9784 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 98.3 34 GTCTTAATCCCCTTTAGAACGGGTCTCTGATTCGAAC # Left flank : TCCGGGCAGCTCAGCCTGCCCAGCCAAGGCATGGGTCAATGGAAACACCCGGATTCTAACCGCACCTGAAACCGAACGCGCCTGATCCCCCGGACACCAGATCACCCCAACGCCAAAAGCACCCGTTCTAGCGGCACAGTAGGAGCGGCGCCCCGCCGCGACCCCCGCTCGCGGCGAGGCGCCGCTCCCACCCACCGAGCGCCTGACCGAAGCTATCGCCAAGCCGCCCTTGGCGCCGAACCGCAACAGCTCATCACAAGGCTCTTTTGATCCCCTTTGGAACGGGTGGCCTCGATCATTCTTTGGTCCAGGCGCAAGACCGGTGGGAGCGGCGCCCCGCCGCGACGGTCGCGCGATCGCGGCGAGGCGCCGCTCCCACGTCGTCTTGCCTGAAGGATGCCCAATGTCGACTCAACCGACGGGGCGATCCGATGATCAACGCCGAACGGAGCGCTGATTCGAACGCTCGCAGAAATCATCTTTCTGACGGTAATCGCTGG # Right flank : CTGCCACGTCGAAAAAAGCCTTTTCTGGTAGTGCTTTACAAGGGCACTCCCCAAGATTTTGTGGATCCGAAAACTTGACGTGCAGATGGTGCTCATACGTTGGTTTCTCGGCGGCGATCAGGCATCGCCTTGTCGGAGTTTAGCGGAATCAGGCTGGGTCGGACTAGGAACCTCCGCACAGGTACGGGTCAGGGTCGGGCAGCTCGCGTGCCAGTCACCAATTCTCAGCCGGGATACGCGGAGACATCTCCGGCGAGGAGAGTGTTCAGCGAGCCTTGGTCACATCCGGCCGGGGCTCGATCAGTGGGAGCGGCGCCCCGCGACGATCGGGCGTCGTCGCGGCGGGGCGCCGCTCCCACTGCGTCGGCGTGCCGGATTTAGAAATCGTCCATCAACAACTTCCCCCCTTTCGCAAAGGGGGGCTAGGGGGGATTTCGGGCGGCATCGCTCACATCGGGAAAGAGTTGATGGGCGCTTCCTTAGGATCAATACCCTTCGGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCCTTTAGAACGGGTCTCTGATTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 43816-45578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIJR010000004.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_4_length_92644_cov_27.8622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 43816 37 100.0 35 ..................................... CAGAAAGCGGTCCTCGACATCGGCGAGAAGGCCGG 43888 37 100.0 36 ..................................... CATCGAGGCCTACCTGACGTGATTGGATGTTGCGAC 43961 37 100.0 35 ..................................... CGAAGTCATGGCCGCGATGGAAACGTGAGCAGGGC 44033 37 100.0 35 ..................................... ACTCAGACGATCGTCGACGGCGTCCCGGTCTTCAC 44105 37 100.0 34 ..................................... TCGCACCAGCGCTCAAGGTCGCCCTGGCGCTGAT 44176 37 100.0 35 ..................................... GGGTCCAGGGTCCGGGCTATCGCTCTGGCGTTTTC 44248 37 100.0 35 ..................................... TCATCAAGCAGAGCTTTAGCTCTATGCTCGCCGAT 44320 37 100.0 35 ..................................... AATTACTCGGCTCACGCTGATGACGGACGTTGACG 44392 37 100.0 34 ..................................... AGACATGGATTGCTCCTGTTGTTCGGCGGTTGCC 44463 37 100.0 34 ..................................... CATCGCGACATGACGCGCGTGCGCCGATCGACGC 44534 37 100.0 34 ..................................... TTACCGCGACTAACAGCATCTCAACCCACATCTT 44605 37 100.0 34 ..................................... CACCTGCGCCTGATCGACCGATGGCCGCAGACGC 44676 37 100.0 34 ..................................... AACAACAGTGTCCCCGTTGAATGGGAGCGTCAGC 44747 37 100.0 34 ..................................... GTGCTCGACCGGGCACAGCACAAGGAAAGGGTCC 44818 37 100.0 37 ..................................... GATATTCTGGCGCTGGCCTCACGCTCGAGCATCTGGG 44892 37 100.0 34 ..................................... CGACTCCTCAGCCGGTGCAGCGCGCCGCCCGAGC 44963 37 100.0 35 ..................................... AATATGCTCGACGGTGAGCACATGACGCGCATGAT 45035 37 100.0 36 ..................................... TGCGGCGAGGATGCGCTCGCGGGCGGTCACAAGGTC 45108 37 100.0 36 ..................................... TCGATCGCATCAGACTCAGAGTCTGCTGGCACGGCG 45181 37 100.0 35 ..................................... ACTTTGCCCTTGGACCTTTCCACCGCATCGTCTGC 45253 37 100.0 35 ..................................... ATCCCGCGCGCCTCAATCAAATCCTGAAGCTCGCG 45325 37 100.0 36 ..................................... AGGGCGACGTCTGCGTCTTGTTCGGTGCCGTCCCAG 45398 37 100.0 35 ..................................... ACCCAGCCCTGCCAGTCCGGCAGACCAACGGGCAC 45470 37 100.0 35 ..................................... CAGAAGGGCGTGGGGACCATGACCATGAACTGACG 45542 37 78.4 0 ...............AC....CA.........AGC.G | ========== ====== ====== ====== ===================================== ===================================== ================== 25 37 99.1 35 GCCGCATCCCGCTCTGTGGAGTGGGTATCGTTGAAGC # Left flank : GATACCAACCGCCGAGGCAAGCCGCGTCCTCAGAAGGCCGTTCGCCGCTTGCTCGCCTATTCCGGTATCGATCCAGCACTGGTTGAGACAGTCACTTTCGAGCCAGCGCCAATCCTGCGCGGGGCAATGCGGGGCGCAGACGCTCAACCGCCGCGACACTTGGCGCACTGGCCGCGTGTTCATCTCTCGATTCAGTGGCGCGTGCCCGTTACCGGCCCCCTGGCGCTGGGAGCTGGCGTCGGCTATGGATACGGAGTACTCATGGCTGCCGCCTGAGAAAGGCACGCCTTGGCTGGCTCTCAGTAAGCAGATCGACCGTCCCGCGCGAACCCCAAGCGACCGCGAAATACCCGGCAGGTTCGCGCTTAAGAGCCATCTTTATGAATCATCAGGTTACAGGCGCACGTCGATACGCGCTGGACCACGATGGAGGCCAATGGCAATAGGTTCGCGCAAAGCGGGCAACTTTTTGTTGATAATCAAGCGGCCAAAGCTGAGGG # Right flank : GCCCCTGCACGCATGGACGCCACTGCTGACGCTCCTCAGTTTTGAGGACCGCCCGATGCCATAGCCGAATGCTTACTTGCCCTGAATGGGCGAGTGGGTCAAACCTGTGGGGAATGAGATTGAGCGATTGCCCTATAGGGCTGATTCCGAAGGGGAATTCAGAACATATGGAGATTGGCGGAGAGAGAGGGATTCGAACCCTCGATAGGCTGTTAACCTATACACACTTTCCAGGCGTGCTCCTTAAGCCACTCGGACACCTCTCCGGAGGAATGACATGATCGGGCACTTTGATCGCCTGAGGCGAGGGCGCGCGATCTTCCCTGTCGTTCAAGAGCGCGGAAAGATACATGAGATCCGTCTCGGTTTCAATCCGACATTGCACCCGCGCACGCCGCATAATAGCAACCTTTCATCGACAGCCTGAATTTTCAGAGTAGCCGTGCCCGCGCGCCCGCAAGTATCGACTCCTACAATCGCTGATCACGCCGACCGCCATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCATCCCGCTCTGTGGAGTGGGTATCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 10803-10408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIJR010000145.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_145_length_12229_cov_24.0608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10802 29 100.0 32 ............................. GCCGGCATCCTGCGCAACATCAGCGTCGGTTA 10741 29 100.0 32 ............................. TGGTATTTGCTCGCCGATCCCACAGTCGCCCC 10680 29 100.0 32 ............................. GCATCGTCTACAACGCCGGCCAGTAACCCGCG 10619 29 100.0 32 ............................. AATTCTGTGGCTGATCCCCTTGATCGCGCTGT 10558 29 100.0 32 ............................. GACGCATACCGTCGGCAAAAGTTGATGGTGCG 10497 29 100.0 32 ............................. CCGAACGGCAGCAGCCAGAACGCCAGCCCGCC 10436 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 CCGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : GATCATCCCCATGATCGAGGAAGTGCTGGCCGCTGGCGAGATCGATCCGCCTGCGCCGGCACCGGAAGCGGTCGCGCCGGCCATCGACGACGGGAAGCCGCTGGGCGATGCTGGTCATCGTCACTGAGAACGTGCCGCCCCGGCTGCGCGGCCGGCTGGCGGTCTGGCTGTTGGAGATCCGCGCCGGGGTCTACATCGGCACCCCCTCCAAGCGGCTGCGCGAGTTCATCTGGAATCAGGTGCTGGAAGGGGTGGAAGCAGGCAACGCCGTGATGGCCTGGAGCACCAACACTGAATCCGGCTACGATTTCCTCACCGTTGGCCCGAACCGACGCATCCCGGTCGATTTCGACGGTCTCCGTTTGGTCAGTTTCCTGCCGCCTGATGAACCGAAAAACGCTCTTTGAAAATCGAAAACCATCCCCTTCGAAAACGGCGGCGTTGTTGGTAGATTTATGCCGGTCTGATTTCCGTCTGGAAATCAGCGAAATACGGGAAGA # Right flank : ACGGGTTCAATACGCTTGCAGCAATCACGCCCCGTGCTCGCGCAATAGATAACCACAGAGCACCTGCGGCATCGCTTTGCCTTTGATCCGCGGTGGATTTCCGGGGCGATACAAGGGGCGTCGTTCAGTCCAAGCGTGTCCGAACCGTCAGTGCCTTGCGCGAATCCCTTGGTCTTCGCTGGCGGTCGTTTCCTGTTGGAGCGACGGCTGCTTAGGACGCGCTTCCGCATGATCCTGTGTGATTCTGCCGGATGTCGCCCAGTATTCGCGGCCTCGCTGCAGGGCTCGGCGGATTTCGCTCTCACTCGTCCAACCTGCCGGCCGCGCGTATGATCGAGGTCTGTGCGATCCAAGCACAGTGGCTCAGATTCAGAACATTAGAACACTCTAACATTTGCTCGACCCGTGTTATGATTCGCGGGATCTTGCAGCGAGGAATCATTATGCCCAACGCAGAGAATAAGACGACCGACGCCAAGTCGGACTCCCGAGCCGCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10143-10410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIJR010000153.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_153_length_11349_cov_24.7279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10143 28 100.0 32 ............................ TGACAAAAGGGATCCTCGCGGCTGACACAGCG 10203 28 100.0 32 ............................ AGTCAGAGGCTGCGAACATCGCAGACTCTGAC 10263 28 100.0 32 ............................ CGTCAGGCCGCGCACGTTTCCAAACAGCTTCG 10323 28 100.0 32 ............................ TGGCTCGGGTCTGGTCGCGTTCGTCGCCCAGC 10383 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 34 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AAGCGGACCTGTCTCGACTGATGGAGCACCCTTGGCTTAAGGGTATGCGGGACCACACCGAGGTCGCGCGTATAGCCCAAGTCCCCGTGAACGCCGAGCATCGCAGTCTGCGGCGAGTTCAAGCCAAGAGCAGCCCAGAGCGCTTGCGGCGCCGGCAGATGCGTCGGCACGGTCTAACCGAACAGCAGGCGCGCGAGCGCGTTCCAGACCTGGCCGCGGAAATGCTACAACTACCCTTCGTGACACTCGCGAGCGTCAGTACCGGACAGAGCTTTCGCCTGTTCTTGCGACTTGGCCCACCAACCGCAGCCCAGGCCGGCCCATTCAACACCTATGGATTGAGCTGCACAGCGACGACTCCCTGGTTCTGACCCTTTTTCTGGTTTCCACGATAAGTCTTTGATCTCAATGCCCATGTCGTCGCAGCTATCCAGAAGGGTATTCGCGACTGGCTGCTGGATAGTTCTTTTTATTCAAGGCCATACAGCGGTTCGGGGCTT # Right flank : AGCCCGCGTAGGGCGGAACGCGATAGAGGTTCCGCCATTTTGCTCGGTATCATGATGGCGGATCGCCCTATCGGGCATTCGCCCTACGAGGCCTCCACGAGCCCGCGTAGGGCGGAACGCGATAGCGGTTCCGCCATTTTGCTCGGTATCGTGATGGCGGATCGCCCTATCGGGCATCCGCCCTACGAGGCTGGGTCGCCGCCATCGGCTCATGGTCAGAGGCCGGAGTGTCGCCGTGCTCGTGATACATTTTGGGACATCCCTGTCCCAAAATGACTGCGCTCGGCGACAGCCTTCTTGCCCCGATTCGCCCTGCGTCCGTGGCGCTACGCCGACCTCTCGCAGGCTCGAGGCCGGCTTCGCACCACTCCCTCAAATGGCTTGACGGCGTGTCGGATGCGCTTGCATATGGCCTACGCGGCTACGGGATCTCGTGGACCTGCGGTCCACGGCGACCCCTTCGCCACTCCGGCCATACGCCCGCGCCGACGCCTATCGGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //