Array 1 2962-2539 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000053.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2961 29 100.0 37 ............................. CCTGCCAAACCAACTATTAGATTAAACAACTCGACAG 2895 29 100.0 36 ............................. ATAATTAAAGGCGACATCATAATCACGTATATTATC 2830 29 100.0 37 ............................. AAAGAACCTCTTTTTCTGTTTCATCAACTGTGTTTAA 2764 29 100.0 37 ............................. GGTGGGCTGTCTGGATTAGCTTACAACGCTAAAAATT 2698 29 100.0 37 ............................. ATTTGTGTCTTTTTCCAGTAACGATAAAACTTTAAAG 2632 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 2567 29 82.8 0 ............T...G....T.CA.... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 97.5 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGTAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGATTGAAGTATTTGAATTTGAAGGAAGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 131707-132064 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000090.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 131707 29 100.0 36 ............................. TTAGTTCCACTATAAAAATAAATCAAAACTAAAACC 131772 29 100.0 36 ............................. ACGACTGCCTCTTTAGCTATAAATGTTTTTAAAATA 131837 29 100.0 37 ............................. CCGATAACTCCAGATATTCCTGCTGTTAATTTGGATT 131903 29 96.6 37 ................G............ ATGAAACAGATACTCAATGCTTGGGGTTGGAGATTTG 131969 29 96.6 38 ................G............ AAACATACAAGGTGAAAGTGTTGAAATTTCAATCTTTC 132036 29 93.1 0 .....G..........G............ | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 37 GTTTTATATTAACTAATTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTTTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAAGCTCTTATTTTTTCTAAGCTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCCTCACATATATGATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAATTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17466-16182 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000109.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 17465 29 100.0 37 ............................. CGGACAGTAGTTCGTGGGTAACTGCGTCCAATTACAA 17399 29 100.0 37 ............................. AAGTATTTTGTTAGTTTATTTCAATCCTTAGAGGACT 17333 29 100.0 37 ............................. AGAAATGATTATTTAATTAGGGCACATGAAGGAGAGA 17267 29 100.0 37 ............................. AAAGTTGAAAATCCTAGTCTTGATGTTGGAGATAATA 17201 29 100.0 37 ............................. GCATCTTGTGGGTTTATATGTTGTGTATTTAGCCCTG 17135 29 100.0 37 ............................. AAACAGTTGAGGAAATTGAATTAAATACATTAGACGG 17069 29 100.0 38 ............................. TCTGTGACAGTCAATTCTCTTGCATCTATATAAGTCCC 17002 29 100.0 38 ............................. CAAAAATAAGAGGATAGGGGGGCAACACTTAGTGGAAG 16935 29 100.0 37 ............................. CTCATTATTTCTCTATATTTTACAACGGCATTTAATT 16869 29 100.0 37 ............................. TTTGATGAAAAAAATGGGCTAGGAAAAACGGTGAAAG 16803 29 100.0 38 ............................. CAATATTATAATTAAATTATAGCATGTTCACGAAAAGG 16736 29 100.0 38 ............................. TCGCACGAATCCGTGCGACGAAATATAAAAATAATTAA 16669 29 100.0 37 ............................. TCAATAATTAAAACTTTTTTGTTCATTTTAGACAAAT 16603 29 100.0 37 ............................. TTCGAAAAGTTCATCCATGTAGTTTTTAAATTCTTCT 16537 29 100.0 37 ............................. TCGATAATCTGATTAGCTTTCCAACCTGCCATGCCCG 16471 29 100.0 37 ............................. AAGCGAGGATTTAAAGAGTTAATAAAAAGAGATTTAA 16405 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 16339 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 16274 29 75.9 35 A...........TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 16210 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 96.9 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAGAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 36123-36479 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000070.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 36123 29 93.1 35 ...............T....C........ CTTGTAAGATTTGAGTTATCTATTTTATGTATATC 36187 29 100.0 37 ............................. AAACGAGCTGCAACAGCTATGAGAAAATATGGAATAG 36253 29 100.0 38 ............................. TTTATATACTATACTATATTATGATACTATAATTTTAT 36320 29 96.6 37 ...............T............. AACCCCAAATGAAAGCAGGTTTAAAAAAATCAAATAT 36386 29 93.1 37 ...............TA............ CCAATAATAGAAATCACACCTTGTAAAACACTTTTAA 36452 28 82.8 0 ...............T....-..TC...A | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.3 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AAGAAAAAGTAGATAAAAAATATCAAGAGAAGAATAAAGAGAAAACAGAAACGAAAAAGCAAACATTAACTAGTGAAGAATTAAAGAAAAAAGTTGAGTCAATAATTTCATCACAGTATAAAGGAAACTATTATACAAATGATATACTGGATGCAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGATAATGAAAGCAGTTGTAAGGTATTTACTAAAGACTTAATTAACAAGTTGAAAGAATTTAGAATAGACTCAGCAGAGATATATTTTGTAGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGATTTCTTGAAAGCTCAAGATAATATTGATAGCATAGATAATGTGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCATGTGTCTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATAATTTTATGACATG # Right flank : ACTAAATAGAAAAAGAAAGCACTTACTTTTATGGTAGGTGCTTTTGTTTTGCTTATAGTTTTTCATCATCTTCATATTCCATAATGTCGCCTGGTTGGCAGTCTAAAGCTTTACATATTTTATCAATAACATCAAGAGAAACATTTTTATTTGAAGATAATTTTGCTATTGTGGTAGAAGAAGCTCCTATTTTTAATCTTAGTTCTTCTTTAGTTATGCCTCTTCTGTTTAGTAAGTCAATTAGTTTGAAAAATTTTATAGACATGTTAATACCTCCTGTATATTTATATAATACTATATATCTTTATTAAAGTAAAGATATATTTATCAAAATAAATAAAAAGTATTGACATTATTTACTAAATAATGTATTATTAGAGTATAAAGATAAAGAAATCTTTATAAAAATAAAGATAAAAGGAATAAAATAAGGAATATTCTCTCTCGTCAAAGTTTAAATATTCCTTATGACATATAACTAATGTAATATAATTATATGT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 38271-38889 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000070.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 38271 29 100.0 37 ............................. TCTAATAATCAAATGGAAGGCGGTTTTACACAGGCTA 38337 29 100.0 37 ............................. GCTAATATGTTAAGTAAAAAATTATCCATACTATCAC 38403 29 100.0 36 ............................. AGTGCTGTAGCATTTGCTATAGCCGCCTTACCTATT 38468 29 100.0 39 ............................. TCTCCAAGTTCATCACTCCCACATTCGGGGCAAATACAA 38536 29 100.0 36 ............................. TTTGACAGTTGTTTGAGTAGTCTTAACATTAAAAGA 38601 29 100.0 37 ............................. GCTCTTAAAAAGATACTATTTAGATTTGTATTTTTAG 38667 29 100.0 35 ............................. ATCACTATAAAAGCTTTTACAGAAAAAGAAATAAC 38731 29 100.0 36 ............................. CTAGCAAAATTTGCTAAAAGGTACTATTATTGTAGT 38796 29 100.0 37 ............................. TTTGGTGGTATTACAATAGTTCTGTCTGGTTTTACTT 38862 28 82.8 0 ......T.........G.....-AA.... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TTATCATGTAGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAGAATTTACTTAATGAGTATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAATTTGCCAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAATTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAATAAGTAAATAGAATAGATAAAGCACTTGAATATTCTGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGTTTGATTTTTATGTTTAAGTATGCTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTGAGTATTGAAAATACTCAACTTATTTTGTG # Right flank : TAAAAAAGAAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAGTTTGGTCGGTTGAGTAAAATAATTAGAAAAAATTAGTAAAAACTCTTGATTTATCGTACGTACTATAATATAATTTAAGTACGGACAATAAAAAGAGAGGTGATTAGATGTCCAGTAAATTAGGCAGACCACCAAAAAAAGACTCTAAAAAACTAAGATTTGAAGTTAGACTTAATCAAGAACAAGCTGATATATTAAATGAGTGTGCTGAAAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGGACTTCTTACAATTAAATTTCAAGGAGGATTTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAAATAGAGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 40676-40905 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000070.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 40676 30 100.0 36 .............................. AATTGCTATGATTTAAATAGTGGATTTGATTTAATT 40742 30 100.0 37 .............................. TACATTTATAATTAAGAATGATGGAAGCATATGGTCG 40809 30 96.7 36 ............T................. TAAACAATAACTTCTCTCATATTAAAAATATCATCT 40875 30 96.7 0 .............................A | A [40900] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 37 GTTTAAAAGTAACATAGGATGTTTTTAAAT # Left flank : ATTGTATTAAATAATTTATTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAAAAATGAAAATCCAGATGAATTTTATAGATTTGTAAGTTTAGTGAAAGAAGAATGTAGGAAAAAAAGAGAAAGAGAATAAATAATATAGATAAAGCACTTATAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTATCAAATATATAGGGTGATTACGCATCCTAAGTGCGAGATTATCCCAAGCAATTGGAATTGATACTCACAAAGATGATTACTAAATAAAGTAATTATCACCATCCCAATAAACATTGGGTAAAAACATCTAAAATTTAAAAACACTTGGGATAAAACTTATAGACATAAGTAATTGCAATGATTTTAATAATTTATGTTGTGCAAAAATGTGTATTTTACAGTG # Right flank : ATTATAAAAGTAGGTGTTAAAGATGATAAGTACAAGAAAAATAAAAGTAAGGTGTGATGATAGTACCTTTTATACATTCTTTAGACAAGAGCAAAGAGAACAAAATAAAGCTCTAAATATTGGAATAGGTATAATACATGCTAATGCAGTATTACATAATGTAGATAGTGGAGCAGAAAAGAAACTAAAGAAAAGCATAGAAGGCTTACAAGGTAAAATTGATAAACTTAATAAAGACTTAGAAAAAGAGAAGATAACTGATAAAAAGAAGGAAGAAGTATTAAAAGCGATTGAGACTAATAAAAAGATATTAGATGGAGAGAAGAAAGCTTTTAAAGAATCAGAAGAGTATAGAAAAGGAATTGATGAACTTTTCAAAAATACATACTTAAAATCCAATACATTAGACCATGTTTTAGACAGTATGGTTAATATTCAGTATAAAAGAACTTTAAGTTTAGTTACACAAAGGATTAAAAAAGACTATAGTAATGACTTTG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAAGTAACATAGGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 24621-24327 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000085.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24620 29 100.0 36 ............................. GGAGCGAGGTATCCACTGCTTTCCTCTTAGACCACC 24555 29 100.0 38 ............................. CTGTTATTAGAAATTGAAGGTATATTTCTAACTACAAA 24488 29 100.0 37 ............................. GCTAAAGCTTCATTAAGTAGCTGAGTAGTAGCGTTCA 24422 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 24355 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.9 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTGCACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58176-58402 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000115.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 58176 29 100.0 37 ............................. GAATAAAAATATATCATAGCAAAACCTCCAAACTTTA 58242 29 100.0 37 ............................. TTGTCATTGTCTTGCCCTTGTACAACTACCATATAAG 58308 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 58374 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 92.2 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGATCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATAAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGCGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCAATCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGTTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTGGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 615-139 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000024.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 614 29 100.0 37 ............................. AAATCAAAACGCAACAGAATTTTGGCAAGAAGTAATT 548 29 100.0 37 ............................. AAAGACAACGACTCATTCTTGGTATTTGACATAGAAA 482 29 100.0 38 ............................. ATCATTATAGGCTTCTTCGCAATAAAGACTTTCACAAT 415 29 100.0 37 ............................. GTAATAAGCTTCAAGATTTTTATTATTCAGATGATGA 349 29 100.0 20 ............................. ACTAAATTCAATGCTATCAC Deletion [301] 300 29 100.0 37 ............................. AAATTAGAGTCAGCTTTACATAAAGCTTTTGATAATA 234 29 93.1 36 .................C..........T CATGATATAATTTTGAAGTTATCAGATTTTTTCAAT 169 29 89.7 0 ...............T.......T....A | AG [146] ========== ====== ====== ====== ============================= ====================================== ================== 8 29 97.9 35 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGTATTGTATCAGCTTTCATATATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTGGTATAGATATTCAAAAATAATATTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGCTACAAAGTAAGGCTTAACGCTTGAAATATAAGGTGTTGAGGGGGTATGATAAGTGTTATCATTTGCACTACTCATGCTTCACTGCAATTTTAATAGTATTGTATATGTGTAAACATTGGAAATACTCAATTTATTTTGGG # Right flank : AAGTTGCAATGAGTAGAATAAGATTTCTATTTATAGCAACTTTTTTTACATAAATATATAAATAAAATATATTATAAAAAATATTATAAAAACAAGAAAATACAAAAAATTATAATTAAAAATACGATTCATAATATAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 29852-31792 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000003.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29852 30 100.0 36 .............................. CAAGAAGAATTTGCTAAAAAAATTGACCTGTCTCAA 29918 30 100.0 36 .............................. TCTATATATAAAATTGAATGTTTATCTTGTTTTAAT 29984 30 100.0 36 .............................. ATAGATATAGCTAACGATGCCGACATGTTTGGTAAT 30050 30 100.0 36 .............................. AAGTCTATATCTTCCCATTTCTCAACACCGAGAATT 30116 30 100.0 36 .............................. ATAATGACAGCATATGAACTTGCAAAAGATAAAGAT 30182 30 100.0 36 .............................. TTACCAAGCGACAGCGAATTTACAGAAGGAATATTG 30248 30 100.0 36 .............................. TAAATTTTCTTCCATAAATCCCCATTGCCATAATAT 30314 30 100.0 36 .............................. TATACTTTTTTATTTAGTACGCTATCTTTATATGGA 30380 30 100.0 35 .............................. CTTTTTTAAAAAAACTTGTTGAAAAGCATTTCCTA 30445 30 100.0 35 .............................. CAACAAGTGTTTGACCTTCTTTTCCAGGAATATGA 30510 30 100.0 36 .............................. ACATTTTTATTTCCTTGTGCATCAGCTTCGAATAAG 30576 30 100.0 36 .............................. CCAACCCACAAAGCGACCTCTTCTTTTAAAATAAAC 30642 30 100.0 36 .............................. CCTCTACCAGCTAGAGAAAAATTCTTAGCTCGTTGG 30708 30 100.0 36 .............................. TTTTTATACTTTCCCATGTTGTTGTGAAAAATAACT 30774 30 100.0 36 .............................. CTGCTACAACTATGTTGACATCTAATGGCACTTATG 30840 30 100.0 35 .............................. TGATATATCTATTTCAAACGATTTGGCTTTTGAAA 30905 30 100.0 36 .............................. CGTTGTAATTCAGCTGCTACTGGCGAGCTATTGAAA 30971 30 100.0 36 .............................. CAAGTCACTTTAAAATTAGAAAAACCGAGTTCAAAA 31037 30 100.0 37 .............................. AAGTAACTTCCCTCTTTTACTCTAGCTGTATACACAT 31104 30 100.0 36 .............................. CCAGCTATTAATTTGCCTTTAGGGACAGCAACTGAG 31170 30 100.0 36 .............................. AAAGTAAGTGGAGGTTTTGAGGAAAAAGTAAAAAAC 31236 30 100.0 35 .............................. GAAAATGGTCGAAGCATTTAAGCAATTTAAAGCTA 31301 30 100.0 36 .............................. ATAACAACAGAGAGCAGGACATGGATGACTTAATGA 31367 30 100.0 36 .............................. TAGTGTAGGAGGTGTTTAAATTGTTTTTTATATATA 31433 30 100.0 36 .............................. AAATTTCCTGTTACAACATCTAAAATTAATAACACA 31499 30 100.0 36 .............................. CTGATACTTTGTTTTATTTCTTCTATTTTTAAACTT 31565 30 100.0 36 .............................. TTTAAATATGTTATTACTGGAGAACTTACGTCATTT 31631 30 100.0 36 .............................. ACTGGTGAGGTTGAGGGTTTTGAGAGAAACGAAGTC 31697 30 100.0 36 .............................. TCATTAGTACTTGTCATTCCAGTAAAAGCTACTTTG 31763 30 93.3 0 ...............A........C..... | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.8 36 GTTAAACAGTAACATGAGATGTATTTAAAT # Left flank : CAGATTTAAAAGAGTATACAATCTTTTTAAATACTATAGTTAAAGATGAATCTGGAAATATGATTGTAGGAAGTGATGTATGGTATGAATATATATCACTACTAAAAAATGATAATGTTGAGTATTCTGAAAAGAGGGTGAAAATGTCTGAAATTATGGAAAAACTAGATTATTTTACGTATAAAGTTCAGAAATTTGATAATTCATTTAATGATTTAGTTGGAGATATTTTTTATATTGATGATGGAAGTAAGTATTTTACAGAGGGAAAGTTTGATAGAAGTAAATTTAATCAAAATGAATTTCTATAATGTATTTAGATTATATAGAGAATATTTATCCCAAGTTAATTAATTAGAATTAGTTTAAAGCTATTGAAATATAGATATTTTATAGCTTATATATTTTTTCTAGGATTAGCTGGGATAAAAAATCTGTATATTAGTGTTTTCAGTGTATTTAAGGGGATTATATTTTTAAGAAGTACTGATTTTAAAGTG # Right flank : TTACTCTATCATAAAATTTTAATATATTAAACAAACTAATATGTGATATACTTATGTATAAATAACAAAATAAATAGGTGATGTTATGAAAATTACAGGAACTTTGATAAATTACTATTTCCATTGTAAAAGACAATGCTGGTTGCTTGGTAATAGAATAAATTTGGAAGAAAATAGTGAAGATGTAAAAATAGGTAGGCTTCTTCATGAACTAAAAGAAGAAAAATCAAAATATAAAGAAATTGCAATTGAAAATATAAAAATAGACAAATTAACAAGAGAATATTTAGTAGAGGTTAAAAAGTCTGATGCTGATATAGAAGCTGTTAAGTGGCAAGTTCTTTTATATTTAAAAAAGTTAAAAGAAAAGGGAATTGTAAGAAAAGGGAAAATTGAATTTATAGAAAAAAATAAAACTAATAAAAAAATAGTCTTTGTAGATTTGAGTGAAGTATCTGAAGAACAGCTTATATCTATAGAAAGAGAAATTGTTAATTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 142288-142912 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000003.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 142288 29 100.0 37 ............................. TCATATTTTAAACTGTTGTCTTGTTTAATATATGGTA 142354 29 100.0 38 ............................. AAAAAATTTACTAATTCAGTATAATATTTATTATCTGA 142421 29 100.0 40 ............................. TAGATGATATTTCTCTATTTTCGTGTCTATATGATGCAAT 142490 29 100.0 36 ............................. CTGATAGAATTTATGACTTTGAAAGAGGCAAATTTG 142555 29 100.0 38 ............................. ATTGAAAAAACTGGCTTTCAGCTTGAAATTTTGTGAAC 142622 29 100.0 37 ............................. TCTTTATCAATAGAGATTCCGTTATCTGAATTATATC 142688 29 100.0 35 ............................. ACGTGTAGAGTAGACAATACAGGTTTTTGGGTAGA 142752 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 142817 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 142884 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 98.6 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAGAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 53684-53063 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZG01000152.1 Clostridioides difficile strain 8785 isolate 8785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 53683 29 100.0 36 ............................. TAAAGTTTCTCACCTCGATAAAAAAACGTATAATAA 53618 29 100.0 38 ............................. TTACTAACAGGAACATCAAAAGGAGGTTTAAAATCCGG 53551 29 100.0 36 ............................. TCAGCACTTGTTGTGCTACCATTTTTTAATAAGCTA 53486 29 100.0 35 ............................. TAGATGCACTTATTGTATCTCTTGCTTTTATTTGC 53422 29 100.0 37 ............................. CTTACATCTTCGCCCTGCTTCATATCACTATATAAAT 53356 29 100.0 38 ............................. AACAAAATGCTTAATAAAAATTCAAGAAAACTATCTTG 53289 29 100.0 37 ............................. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 53223 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 53157 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATATCTTTGAAATTT 53091 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 97.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTATTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGTTTTTTTATCCATATCGTTTAAAATATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAACATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //