Array 1 2922-1246 **** Predicted by CRISPRDetect 2.4 *** >NZ_AECZ01000016.1 Desulfovibrio fructosivorans JJ ctg00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2921 29 100.0 32 ............................. GCGGCCGAGTTCGCGCGATGGTTGAATCAGGT 2860 29 100.0 32 ............................. AAAGCTAGCGTCCATACTCGAGGTGTCATGTA 2799 29 100.0 32 ............................. GGAGGTCCGCCATAGGGGTTCTCGATCGGCTC 2738 29 100.0 32 ............................. AGGATATCGCCGGCCTGAAAAGGGGAGATCAT 2677 29 100.0 32 ............................. AGTCTCGAAATTGTCTGTTTGCGATGTATGGC 2616 29 100.0 32 ............................. GATCGCTTCACAGTGTCCCCCGTGGGCCAGGA 2555 29 100.0 32 ............................. CGGGATAGTCTGGTTAGTCATGCGGCGTTGCA 2494 29 100.0 32 ............................. CAGGCGTCAGCGGCGGCCATCATGGCGGCTGA 2433 29 100.0 32 ............................. AGCTCCCAGCTTCCGGTCGGCTTCACCAACGA 2372 29 100.0 32 ............................. TCCGGGTAGTCTTGGCCGAGCTGCGGATAGGC 2311 29 100.0 32 ............................. AAGGACAGCTTGGTTAGCCATGCGGCGTTGCA 2250 29 100.0 32 ............................. AGGCCTGGCCCCTCCTGCGCATGGCCGCCCAG 2189 29 100.0 32 ............................. GCGCGAAGGTGGGATGAAGCGGTGGGCTGGTG 2128 29 100.0 32 ............................. TGGTTACCCTCGACGCCAACGCCTCGGAACTG 2067 29 100.0 32 ............................. TTAGGATCTTTCCCGAGCCTGCCGATAAGCAT 2006 29 100.0 32 ............................. GCATCCGGTGACGGTCTTCCAGCCGTATTTGG 1945 29 100.0 32 ............................. TTAACCTGTACTGCCGGACGTGCATCGATTCC 1884 29 100.0 32 ............................. TCACCATGGACGCGGCCGAAGCCAAGGCCCTG 1823 29 100.0 32 ............................. CAATCGCGGTCATTGCCCCTGAGCGTCTGCTT 1762 29 100.0 32 ............................. TTTTACAGCACCCCTCAAAAAAAAAGGGGGTG 1701 29 100.0 32 ............................. CCAGCTGGCCACGGATGCGGAATGGGAGCTGG 1640 29 100.0 32 ............................. ATCCATGATCGACTGCTGGAGATGGCCCCGTG 1579 29 96.6 32 ..T.......................... TTCCAGGCGTCGATTTGCCGGATGCAGTAGGC 1518 29 100.0 32 ............................. CGTGACAGCGCCGGACGGTGCTACCACGCAAA 1457 29 96.6 32 ..........T.................. CGCAGCGGCGGCGCAGTGTCGGGAGAGTCGGC 1396 29 96.6 32 ...C......................... TGTACGAGGACGCAATGGAGGTGGTGGGATGG 1335 29 100.0 32 ............................. GCCCTTGATGATGTAGTCTCCTGGACGTCCGG 1274 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTCTTCCCCGCTCGCGCGGGGGTAGTCCC # Left flank : TGAATTTACCTTACCCGTGGCGTTTGGAGGTTACAAACGCTGTCTGGAGGATGAATCGCTGGTATTGGAGCGTGAAGTCCGCAAGCTGGCCGGAGCAACGATGCGTCGTAACGGGCTGATTCCATCAATGATAGAGCGGATCAAGGAGCTATTTGGTGCCGATGACCGTGGTGGTGACACGTAACGTTTCGGGACGTACGCGTGGTTTTCTTGCATCGTGTATGCTGGAGGTCGCACCGGGTGTCTACTGTGCGCCACGAATGTCGAGAGGGGTTCGCGACCGAGTGAAAAGCGTCCTTGACGGTTGGTTCTCGGCCGAGCGGGATGCATCGCTCGTGCTGCTTTGGGCGGATGGCAGCATGCCAGCCGGGCAAGGCGTTTATGTGCTTGGCACTCCGCCGTATGAGCTTTTGGATTATGACGGATTTATCGTCAGCCGGCATCCATGCCCTGGCAATATCAATATTTTAGAATAGGGCAACATCCATTATCCTGCAAGA # Right flank : ATGGGGGCAATGCACCAATGTCTTCGATGCATCCATATAAATTCGCGTGGGTGGTGGAGATTACCACTGACGATGAAAAGCAACACTGCGCCTCAAAAAAATTCTTCAATGCAAAAAAGATACTGTAGAAATGTTTTCTACGAAAAAAATGATGAAAATTTTTCTTTTAAAAAATACAACGGATAAATTATATCAAGAGTAGAAATGGGAAATCTTGTGTTTCTAAACATTACAGCGTAGAATAATTTTATATGCTGCGGTCTACAGTGCACAACAGTGCGCCAAAATAAGAGGCTGTCGAAGGGTAGTCTCCTTCGACAGCCGAAACCCGGATCCGAAGGGCCGGCAGGGCACAGGAGTACACGCTATGTCCACAGCTCAGTATTCTGCCAATGAAACTTGTCGTCTACAAGTGAGCTTTGTGATCGATTTTTGCGAAATGGTCGCCGATGTATCCATCGAAATCAACCCAGATTGTCTAAGACTGTAGTATGCTGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCTCGCGCGGGGGTAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41517-42405 **** Predicted by CRISPRDetect 2.4 *** >NZ_AECZ01000001.1 Desulfovibrio fructosivorans JJ ctg00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 41517 32 100.0 34 ................................ CACAAAGAGTTTAGAGAAGAACAGGCTAGACTTT 41583 32 100.0 34 ................................ ACCACATAGTCGTCCAGGACCCCCTCCGCAACGG 41649 32 100.0 33 ................................ AGCGAAACCCCGCAGGGCCTTATAACTTTCCCC 41714 32 100.0 34 ................................ ATAGGTTTGAAACAAAAAGAGCCCGTGATAATTC 41780 32 100.0 35 ................................ CACCAGATAGAGCCACTGGATGGCGCTCCACTGAT 41847 32 100.0 33 ................................ ACGAATACGCGTTAGGCTTGCGCACAGTCAGGG 41912 32 100.0 33 ................................ TACTTATGGGGTTATTATGAACAGGACTTTGCA 41977 32 100.0 34 ................................ CATGCCATGGGGATACCTCCTATGCGCTCAAGCT 42043 32 96.9 34 ...................T............ CCGTTCCTGGCCATTTTTCGCCCCTCCTTACTCT 42109 32 100.0 34 ................................ CACCTTCTCGCACTTATCGCACTCGGCCTGGACC 42175 32 100.0 34 ................................ TCCTCCATCTGGACTTTGTAGAGCGTGGCGTTGT 42241 32 93.8 35 ..............A....T............ TTCCACAGGTCTTCTATGGTGGCGGTCCCGTTGCC 42308 32 96.9 34 ............C................... GTCGAGGAGATTGGTAAGCTGGAGACCCGCCTCC 42374 32 84.4 0 .................C........G.GC.A | ========== ====== ====== ====== ================================ =================================== ================== 14 32 98.0 34 GTCGCAACTCGCGCGTGTGCGGGGGATGAAGG # Left flank : AAAGGCAATAGAAAGTCGCAAGAGAAGTTCGTTTGCGAAAAATGCGGCGAGGGAAAGCGGCCGGTGAATGCCGACTATAATGCCGCTCGTAATATTGCCCTCGCGACTGGGGATGTGCTACTGCACGGATATATCGAGTCTGAACCTGACGCCCTGGGCGAAATGGATCAGCTCTGGGAGGGTGCGCAGGAGGCATAACGCCGTTGACTGCGATCCTGCGGTGGATTTCACCACCGGGGGGCGATAAGCGGAGCCATTGGCATGGCAGACGTCCTGATCGCCCGACTCCTGCCCACGACGCGAGTGGCGACGTTCTTTGACAGGCGCGAACCCCAAGTGGACGCGTTTTTCCCGGGAGGTTCGCGCGGCGGCCAACCTGCTGCCGTTACGGGAGAAGCTCATCTTATACGGCACAATTCGTATGAGGTGATGGCCACAGGAGCCTGGTTCGCGGAAAAGCCTCGACGAAGCGGCTCCGGGGGCCAGGAATCAAGGGGGCA # Right flank : ATCTCGAAGCCCTTAGCATGGACAGAGTGATGATCAGGGCAGATGAGGGTGGGCGTTAATCGAACTCAACGGATGTTTATATTTCTGGACAACGCAGGTCCCTTTTCCCTATGACGGGGCCATGCGCCCGCAACTCCCGCCCATCCCCCTCGAGGCCCGGACCTCGCAGCCTCTGCCGTTCTACCTGACGCCGGTGTCCGCCGGTTTTCCCAGCCCGGCCGAGGATTATCTCGACCAGGCCCTGGACCTCAACGACCTGTGCATCGCCCATCCGGCGGCCACGTTCTATGTCCGCGCCAGCGGGGAATCCATGCGCGGCGCCGGCATCCAATCCGGCGACATCCTGGTGGTGGATCGGGCCGAGGAAGCCCGGCCAGGGCGCATCGTCATCGCGGCCGTGGACGGGGAACTGACGGTCAAGCGCCTGAAGCACATGGACGGGCGTTTGTTCCTGGCCCCGGAAAACGACGCCTACAAGCCCATCGAGATCCGGCCGGAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACTCGCGCGTGTGCGGGGGATGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //