Array 1 200668-197941 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCJ01000015.1 Pseudoalteromonas rubra strain S2599 S2599_S27_L001_R1_001__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 200667 32 100.0 32 ................................ AGCATGTCAGCAGCAGTATTGGAGATGTCCGC 200603 32 100.0 34 ................................ AACTCAGCAAAAAAGATCCTCAAAGAAATTTATA 200537 32 100.0 33 ................................ CCGGTACCGGCGAAACCCGGAGCCTTTACGAAC 200472 32 100.0 34 ................................ AGCACAATCCAGTGGTCACGTGCCTGGGTCAGGG 200406 32 100.0 33 ................................ GATTTTCTGTGGCACAGAGCGGTATTCTGCCAG 200341 32 100.0 33 ................................ ATTAGGCCTGCGGTGTTTATAGACACGCTTTGA 200276 32 100.0 35 ................................ TTCGACTAGCTTTATGCAGTCTTGACGAGTTAGAC 200209 32 100.0 33 ................................ AACGGCGCTTTTTTGGCAAAAATGCCTAATGAT 200144 32 100.0 33 ................................ AATACCCAAACCTTACCACTCATGCTGAATGCA 200079 32 100.0 34 ................................ ACATGATGTATGTCTACCAAGCGCAAAACTTATA 200013 32 100.0 34 ................................ CATTGGCGCGATGCTGACCAATCTAATCAGCAGT 199947 32 100.0 33 ................................ CATGACGCCCTGGCTGATCGCCTGCTGGAGTTC 199882 32 100.0 34 ................................ TGAGCCAGCAAAGCCACCCACGGCTGCGCCTATG 199816 32 100.0 33 ................................ ATGCACTTATGGCCCGACTTTGTACGTGAGGGT 199751 32 100.0 33 ................................ ATTACTAAAGCGTGTAAGATGGTAGTTGACTGG 199686 32 100.0 33 ................................ ACCCGTCGGCACAGCGTAAATCTCCCTTGGAAG 199621 32 100.0 34 ................................ TAACTATGGGGGCTTAGCCCCCTTTCGAGGTTTT 199555 32 100.0 33 ................................ ACGAAAAAGAGAAATGACCAGAAAAAACAATGC 199490 32 100.0 34 ................................ AGACAATCGAAAACTGGCCGGACGAGAGCATAAA 199424 32 100.0 34 ................................ ATCTTCCGGACGCATAAACAGCAAAACATGCCAA 199358 32 100.0 34 ................................ GCCGAATAGATAAAGCGGCCTCTAAACGATTGAC 199292 32 100.0 34 ................................ CAGTTTCAGGGCTCGCCAAGTGTGACGGTGTATC 199226 32 100.0 33 ................................ GCCTTTTTTCGATGCTCTCCATCCCTCTTAAAA 199161 32 100.0 33 ................................ AGGCAGTGCTATCTGGATAAACACCGTGGAGTG 199096 32 100.0 34 ................................ TGCGAAATCGTAAAGGGCTTTGGTAATGGCAAGC 199030 32 100.0 33 ................................ ACCATAGTTTGTTATTTCGATTTCAGCACCAGC 198965 32 100.0 34 ................................ ATCGCACCTCATGGATGACGGCGTTAGACCACAA 198899 32 100.0 34 ................................ CGGCAACAAGCACATTAACCAAAATCAGCCAGCT 198833 32 100.0 34 ................................ TGATTTAGGTTGCAGCGTCTGCTTTTTAGGTGGA 198767 32 100.0 34 ................................ TCAGATGAGGATAAGCGGCATTACTCGCAATCCA 198701 32 100.0 34 ................................ CACCACTCATGACCGTTTGCCTCCATGATTGATG 198635 32 100.0 34 ................................ AAAGAAAAAACCAATGAGCAAGAAAGGTCCAATG 198569 32 100.0 34 ................................ TGACAGGTCAACAAACTCTACGACCATTTCGTTG 198503 32 100.0 34 ................................ CTCATAATACAGGCGTTGAAAAAACTGCTCTATG 198437 32 100.0 33 ................................ ACCCCGTTTTAAGCTGCTTTTTTAAAGTGATGC 198372 32 96.9 36 ......C......................... CGAAGTAACAAAGCAGATGCTGAAAAAGCGATTAAG 198304 32 100.0 34 ................................ AAATCCCAGGCGCATCATATTTTCTGGGGCGGTT 198238 32 100.0 34 ................................ CTTTTGTGTGCATGGTTGAGTGGTTCGTTTATGA 198172 32 100.0 35 ................................ CCCGCTCTGTACATCATTGGGCACATGCAAATTAT 198105 32 96.9 35 ....................C........... GATCAAGTGGGCGATTTGCCTACAGCAGTATAAGG 198038 32 93.8 34 ..........A.....A............... AGAGATGGAACGTCCGGCGCTTAGGGCTGGACAC 197972 32 78.1 0 ...................AA...T...GTTT | ========== ====== ====== ====== ================================ ==================================== ================== 42 32 99.2 34 GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Left flank : GGATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGACGGACAAAAACGCTTACGTAACCTTGCCAAGGTGTGCCTGGATCATGGAGTTCGTGTACAGTACTCAGTATTTGAGTGCGAAGTAGACTCGGCGCAGTGGGTGAGCTTTAAGGCTAAACTATTAAAAATCTATGACCCACAAGTCGACAGTTTGAGATTCTATAAGTTAGGCAAAAACTGGCACAATAAAGTGGAACATCACGGCGCCAAAACGGCCATTGATATTTTTCGTGATCCACTCATTCTTTGATCCCCAATTTGAATACCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCTGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAATTACCGCCAGCTTGGCTGTGTGTTTGACAAAGATTTTTGTCGAGGTTAGCGCAAATCAAGCATTTTTGCTAAGCTGGCTGGGCCTTGGTAACAAGGCA # Right flank : AGCTGCTGGTTCAACGGTGTTGCTGTTCATATTGCTAATATATTGATAGCAATGGAGTATTTTTTGTTAAACCATTATGCGGCAGAGAGGGGATCTGGCTTGCAATATGATTTGCGATACGACATAGTGCGGCCTTAAAAATATGAATAATAACAATATTAAGGATAGTAGGATGAAAAAGAGCGCGTTGGTGTTGTCTGTGTCGGCGGCGTTGGCCATGTTGGGGGGATGCTCTCAGCATGTGAACCCAAGTGATAATAGTGAGCATGCTCAGGTGCAACAAAGCCTTAAGTCTGGAGTTGAGTTACACAACTTTGACATGAGCGTCAGGCCACAGGACGACTTTTATCAGCACGTCAATGGTAAATGGTTAAACACGACAGAAATTCCGGCAGAACGCTCGTCGTGGGGCAGTTTTGACAAGCTGCGTTACGAGTCGGATGAAGCGGTTAAAGCGCTGATCCAGCAAGCGCAGCAACAACCGGGTGCTCAGGGGAGTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 210606-209326 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCJ01000015.1 Pseudoalteromonas rubra strain S2599 S2599_S27_L001_R1_001__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 210605 32 100.0 34 ................................ TGCACAGGACTTGTTCAGACCGTACTACAAGCAT 210539 32 100.0 34 ................................ ATTTGCTGGCGTGGGAGCGGGATATTACGCCGCT 210473 32 100.0 35 ................................ TTGGTTTCTGAGATGGCCTTTTGAATAGCTCTAAC 210406 32 100.0 33 ................................ ATCAGTATTAACCACAGACGACGCATTACAATC 210341 32 100.0 33 ................................ TTGATTTGGCCTGCGATTGCAGGTGTAGGGGGG 210276 32 100.0 33 ................................ AGCAGGGACAACATGAGGGACTATAAATGTCTG 210211 32 100.0 33 ................................ ATAATACAGCTGCTGGAAAAACTGCTCTATATC 210146 32 100.0 34 ................................ GGTCGATTGTCTGCTGGCGGCGGTCTATTCACGG 210080 32 100.0 33 ................................ TCCAGCATTTTATATATATTTTCATTACCGGAG 210015 32 100.0 34 ................................ TTCGCGTATTCCAAGACGGTGACGTTGCAGTAAG 209949 32 100.0 34 ................................ GTATCAGGGTTGCTTTTGCTTGTTGAAACGGTTG 209883 32 100.0 34 ................................ ATGATGTTGAATTTCTTTTTGGGACAGGCATAAC 209817 32 100.0 34 ................................ TCATATATCCCCAGCTGCTCGTTCCAGACGACAG 209751 32 96.9 34 .....A.......................... CGCCTCGTCGGTATTAGACGTCAGTCCGCTGGCG 209685 32 100.0 34 ................................ AAGAGCCACAACCCGGGTTGTTAGATTGGATATG 209619 32 96.9 35 ..T............................. ACTCCACCAAGTAAGCTAAACATAGACGGCCTCAA 209552 32 100.0 33 ................................ TGAATTAAATGCATCACTCCTTGATGCAATAGG 209487 32 100.0 33 ................................ CCCGAAATGGCGCAAGGGATATTGAAAAACTAC 209422 32 100.0 33 ................................ AATATGCCAGCGTCTGAAATGGGCCGTATGGCT 209357 32 93.8 0 ..T.....T....................... | ========== ====== ====== ====== ================================ =================================== ================== 20 32 99.4 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : TCATTATTCTCAGTATTTTTGTCTGGGGCGAAATCCGCTTTTTTAACGCCATCACCGCCAACCCAAACAACACATTAACCGCCGAACAAATGCAGGCCAAACTTGAGCTGCTCGCCACCCAGCGCGCCACCTTCCGCGCCTTCTGGTTCGACACTCTCCAGTTGATCATTCTCAACGTACTCTTCCCAACCCTCACCGCACTACTGGGGTATGTATTCGGCACCAGCAGGAACAATGGGGGGTAAAGAACGGCCCGGTTCCTTGGTTAATATGTTTGCCATTATCTATATTTTATTGCTAAAAAACCTGAAAAAGTGAAATGGAGCGCTAGTCCTTAGTTCTCATAAAAAACCTGAGAGGTTAGCGCTCTTATATGTTCTTTAAAAATAAGGATATTTTTACAGCTACTTAGTTTGGTGATGGTTTTATATGCTATTTCCACAGAGGTTAGCGCAAAACCTGAACTTTTGTTAAGCTGGTTGCGCCTTAACTATAAGGCT # Right flank : TTTTAGAAACCTTGGGCCTGTTGTTCAAGATAATCGAGATTGCTATTTGGGCGGTTCTGAACGTAGCAACTGTTCAGCCAATGACCACACAGTGCCAAGCGTTATTAAGATCAGGCCAGCAATAAAAATAGTCAAACTTATTAGCAGAGTAAAAATAGCCGCCAGAATCGGCGCACCTAACATAGCACTAAGCCAGTCGTTTTGTACGGTAAGGTAAGCCCAACAGCATAACAAACACCAAGGGAACAAAGTGCCAGGCTCCAACAAGCTTGTGACCCAGCTATCCAGTTTGATTAGAAACTTTCCAAGTGCCATCGCCATTGTTTTAGATCACATTTTAATTTAAAAATTTATTCATTTAATTTACATTCTTGTCTGCATAGGCAAAATAAACAATAAATTAAGCGCTAAAAAGGAGTTTTATGCCATTCATTGCCCACCCCGCAGCAACAGGAAGTGAACATCAAAGCGTCCTTACTCATTTACGCGAAGTTAAAGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //