Array 1 170650-170011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKQR01000002.1 Actinokineospora bangkokensis strain 44EHW Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 170649 29 96.6 32 .....T....................... ACCGCCAGATCCCGGGCGGCGCCCTCCAACTC 170588 29 100.0 32 ............................. GTCATCGGCTCGTCCCCCAGCGCAGCCACCCA 170527 29 96.6 32 .G........................... GTGTGGTTCCGGGGTGACGTGCGGGACAAGGG 170466 29 96.6 32 ............................G TGGTGCGGCTGCGCCGCCTGTTCGAGCTGGCG 170405 29 100.0 32 ............................. TCGGCGACGTCCGCGGCCCGGGCGGTCTTGTA 170344 29 100.0 32 ............................. AGGCCGGGCCAGACGGCGCCGTCGTAGGTGCG 170283 29 100.0 32 ............................. CAGAACGGGGCCGCCATGTTCCAGGTCAAGTA 170222 29 96.6 32 ...C......................... GGTTCGAGGGCGTCGTAGCGCAGGGGTTTGCC 170161 29 93.1 33 ...C...................A..... AACCACGTCGCCGCCCCGGCGCCTGGTGCTCTG 170099 29 93.1 32 ...C........................A TACCAGATGGCCCCGGCCAACGCCGCGTACTC 170038 28 72.4 0 ...C.........A.......-..GCTAG | ========== ====== ====== ====== ============================= ================================= ================== 11 29 95.0 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CCGCTTGGTGGCCAAGCCCATCCGACGCGACGGCGACGAGTGAGGGGGCGAGCTGTGTCCGGAGATGCTGCTGGGATCGCGGCTTTCGGCTATGAGCTCGGGGTGTTGAAGCGCATCCGGCGGTCGGGGTGGTGGCACGCGGAGGTGCGAGTGCAAGCCGGCGAGTAACGGGGCACGGGCCGTGCGCGGGGCTCGACCCATCTCGGTGAAGCCACGGTGCGCGGGTCGATCCGGCGCACCGCCGACGTCCGCGCCATCCTGGACTGCTGATCAAGCTTGGCGAATCCCGCAAGTCGTGCTCTGACGACGCATTCGGCGCGCGGTTCCGTGATCAACAGACTTTGCTACTCCGTTGCGGCTGAAGCCCTGAAGCTTTCGCCGGTCGAGGCTGACGACCGACCAACCGCGGCGAGGTTTGGCTGCCCCGAGCGGCCGACGTACCTAGCTAGAAAGTGATGCCAGAGCACCCCAACACGGTGTATCGTCCCAGTTCGGCAAGT # Right flank : GTGGGCAGGAAGCGGCGCCGCAGGCGGGCCAACGCGGAGCGAACGCCGCGGCGGGGCGGCCGGGGAAGCCCGTACCCACCTCCGGCGACGGTCGGGCCTGCCGGAGTGTTGCCGTCCACGAACGCCGCCAAGTCGCCAGGCAGAGGCGTGTCCAAGCGGTACCCGCTGTCGAAGTGCAAGGTGTAGACGTGGCCGATGTCGCCTACGTCGACCAGGTCGCCCACCGTGCCCAGCGCGCCCGGCTCCAGCGTGCACCGGTCCGCGGGGCCGGGGGGTCGTGTCCCGCCGTGAGCGATCTCGTCGACATAAGCCGCGGTCAGGCCCTCCACCCGGTCCCCGCACCAGCGGACGCGGCGGCCCGTGTACTCGGTCGCGTGCGGCAGTTCGTTCACCCGCTCATGGTGACCCACCGCCCGGCCGCGCGCTACGCCTCACCCTCCGGCGCACTCGACCAGGGTGAAAGCCCGCTCGGGGCCGAACTCGTCGAACCCGAACTCGCT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 331082-329614 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKQR01000016.1 Actinokineospora bangkokensis strain 44EHW Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 331081 37 100.0 35 ..................................... CACGTCAAGCAGGCGTGGCTGCTCGCCGCCACCAC 331009 37 100.0 35 ..................................... CACGTCAAGCAGGCGTGGCTGCTCGCCGCCACCAC 330937 37 100.0 34 ..................................... GCGGACATGCTGCGTCGCCACCGCCTCGCCCCCG 330866 37 100.0 34 ..................................... GCCCTGCGCCGGGTCGCGGCCCACCGGGTCACCT 330795 37 100.0 34 ..................................... GGAGCCCCCCGAGCAGGGAGACAACCCCATGGCG 330724 37 100.0 35 ..................................... GGGTCCCAGTCGGCGGTGGAGTCGCTGACGCCGGT 330652 37 100.0 33 ..................................... CGGAGAGTGACGGTCCACGGTTTGTCAGGACAG 330582 37 100.0 34 ..................................... GAGCGCGCGTCGTCGGGCTTGGTAGGTGGTCTCG 330511 37 100.0 33 ..................................... GCAGGTGCTGGACGCCATCGCCCGGCCGCTGTA 330441 37 97.3 33 ....................................T AGGTCAGGGCGATCCACAGCAGGGCCACCACAA 330371 37 100.0 38 ..................................... CCCGAGGTGGTCACCGAGACCAGCATCCAGGCGGCCGA 330296 37 100.0 36 ..................................... GACGTCGACTGGGTGGAGGCCTACGACGGCACCGCG 330223 37 100.0 35 ..................................... CCGGTTGGCGGTCCACCAGATCGGGGCTACCCCGT 330151 37 100.0 34 ..................................... AGCGACAGAACCGTCAACACAAGGCGGTCCACCA 330080 37 100.0 35 ..................................... ACCAACACGGTCCGGATCGTCCAGGCCGCCAACGG 330008 37 100.0 34 ..................................... CTCTTGGGCGTAGGACGCCCACCCGGTCATCCCC 329937 37 100.0 35 ..................................... CCCTTCCAGAACGCGGCGTGGATCCGGGCGCAGTC 329865 37 100.0 35 ..................................... GTCAACCTGGGCGTGCGGGGTGTGGAGCAGCCCCC 329793 37 100.0 36 ..................................... AACACACGATTTGCCCCCTGGGGGGAGTCCGCTCGG 329720 37 100.0 34 ..................................... TTCAGCGAGCAGCTGCACCGCAAGATCCGCCTGA 329649 36 73.0 0 ..C........T...C.....AG...T..C.-..CC. | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 98.6 35 GCAGCGCTGGCCCTCACGGGCCAGCGAGGATCGCAAC # Left flank : ATCCCGCCACGTCACCCCTCGAATCAACTCTCCCCGTATTCACGAAATCGATTCACTCCAAGTCTCCTCAACTCGGCACGTCCGCACTGCCATGAAGGCCAGGGATAGCCCAACAGTCGGCACCACACCTGACTTTCACTGCACTACCCGTCGTGAGGCAACCGCCAACGTTACACATCCATACGATCACCTTACGGTTCGCCGCAGCAATCTCAGAGACAAGAACACCACATCACCCGACAGGAGGACCAAGCTCATCACCCCGCGCAGCACCGTCGAACCATACCCACAGGACGGGCGCACGACAGCCAACCGAACATGCCAAAAACTCGACACCCTTACTGGAGGTAGAAGCTGTTCCGGCTCCCCTCCCCTCGGAACCCCCATCGCGGCACGAAACACCGACAGGTTCCCAGGCCGACCCCGGCGTGTCGTCCCAACTTCTGGGACTACCCGTGCGATACAACAGAAGCTCAGGAAAGACCCCCAGCTCATCCGGG # Right flank : TGGTCGTCGAAATGTCCGTGGCCAAACGTCAACGACCACCTCGCCCTGCCCGTCCTCGTCCACGCCATCCCGTCCGTGCGCACGTCGGGACGAGCACGCAGGTTCCGACCCGACAATCTCCACGCCGACAAAGCCTATGACGTACACGAAATCCGCGGATGGTTGATCAACCGGGGCATCATGGTCCGCATCAGCCGCAAGAACATCGACACCTCCACCAGACTTGGCCGCCACCGGTGGGTCGTCGAGCGAACCCTGTCCTGGCTCACCGGTCACCAACGCCGTGTCGGCACCCGGTGGGAACACCACGGCGCAACTACTTCGGCTTCCTCACCCTCGCCGCAGCACTCACCTGCTTCAAGAAGTTCACCACGTGAGAACAGGTCTAAGCCGGCTCCTGCAATGGACAGTTGCGTGTGGCTGTCACGTGATGGATGGATCCGTGGACAACAGCGGCGTTGCACCATGGGCGTGGACCAGCTGAGGCTTACGTGTGGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCACGGGCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCACGGGCCAGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.70,-18.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 339914-339298 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKQR01000016.1 Actinokineospora bangkokensis strain 44EHW Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 339913 37 100.0 35 ..................................... GACAACACGACGTTGACCGTGTCGGTGACCGCGTA 339841 37 100.0 35 ..................................... TGGTGCAGGTGCACCGTGTACCTGTCGGTGTTCGC 339769 37 100.0 37 ..................................... CACGTCAAGCAGGCGTGGCTGCTCGCCGCCACCACGG 339695 37 100.0 34 ..................................... ACCGTCCTCGACTTCCACGCGGGCGACACCCGCG 339624 37 100.0 35 ..................................... GTCGGCGCCGACATGGGGTGCCACCTGGTGATCCG 339552 37 100.0 36 ..................................... AGGTTGTCGATGGCGGGGTCAACCCGAAGACCGGGC 339479 37 100.0 33 ..................................... TCCCGCGCCTGGCTGGTCCGGGACGGGCAGCAG 339409 37 86.5 38 .....AGC.C...C....................... AGCCGCGGCTCCGCCGCCCCCGACCTGTACGTGTGGAC 339334 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.5 36 GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Left flank : TCGGACTCGGCAGCCTCCTCGGCGGCACCCTGCTCACCCTCGGCGGCCCCCCGACAGTCCTCGCCGTCGCAGCTGCCCTCACCGCCCTGGCCACCGCGGTGTTCTCCGCCACCGGAACTAACCCTTCTTGACCGGCTTCGTGACTGAACCCGGCGCGTCAGCACCCCGGCAAGTGAGACACAGGCCACTCCGGCTCGCCAAGCCCGCGACCACAACGTCCTCCACCGACTACCCGATCTGGCATGTCGTGTTGGCAAGCGGGACATGAGGCGAAAAAGACCCAGGACATCGGTTGGGCACCGAAGACAGACGGACCTCGCATGTCTTGATCACACCCAAGCTGCCGCGAGCTTCGTAAGGTCATCCGCCCCTGCTCGGAACCACCAATGCACCGCAACTTTCCTGTAGGTTCCGAAGCTGACCACGGCGTGTCGTTCCACTTGCTGGGACGATGCCACGGAAACCTGCCGAATCGAATGGAAACCCGCTGATCACGCAGG # Right flank : GTGTTCTGGACGCTGAGACCTATCGGGTCGCGGGTGGCGCTGGCCGTTTGAAGCAGCGAGATGATTCCGGCGGTGCCGGAGAGCGCTTGGTGATGCGTGCGTGCGGGAGTGCGCTCACGCCTTCGCGATCTAGAAGACCAGTGGGTCGTGATGGCCGGGGTTGGTTGCCGCGCCGAGGTGTCGTGCGGTGGCGAGGGTTCCCTTGGTGAGCTGGTATATGCGAATGGAGTCGGTTCGGGGGTTGATCAGCTCTGTGAGGGTTGCCTCGAGCCGCAGTCGTTGTGCGGGGTCGCAGACGACCTCGAAAACGGACTTCTGCACGCGGTGACCGGCTCCTTCGCACGCTTTGGCCACCTGGCGCAGACGACGTTGGCCTGCGGGGGTGGTGGTGTCGACGTCGTAGGTGATGAGCAGTTCCATCAGGTCAACGTCCAGGGTTGGTAGGTGTGGGTGTCGCCGCGGAGGTGTCGAGCGAGGAGACGGGCTTGGATCAGGGGGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 157132-157308 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKQR01000005.1 Actinokineospora bangkokensis strain 44EHW Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 157132 27 100.0 48 ........................... GCTGGGCGGCGAGGCGTTGGACGGCGGCCCAGGAGTTGGGGCCCATCA 157207 27 96.3 48 ..........C................ AGGAGCGCATGGCGCGTTGCAGGGCGGCGTAGGTGTTGGTGCCGGGGG 157282 27 96.3 0 ....A...................... | ========== ====== ====== ====== =========================== ================================================ ================== 3 27 97.5 48 CGCCGTCGATGGGGCCGGTGTAGCCGT # Left flank : GCGCGAAACGCGGTGATCCTCCAGGCGTACGTCGATTCCCGCAACGTCCAGCACCTCCCGATCGACGACCGCTCGGTCATCGACGCACCCGTTCACCTGGACGAGGGCACCGATCCGGATTTGGCTCAGAGCGTTCTGCCCTGGCACCTCCTGGGCTGGACCCTCACCACAGCGCACAACCTGTCGCGCTCTGCTGCACTGCCACGTACACCCCGATGTCGAGAACGTGGCAGTGCCCGGCTGTGGCGACCTGCACGTGCGGGGGCGCAGCGTCCCTCGACGCAGGCTGACACTCGCTCGTGTCTGCCGCACCCCAGGGCAGTAGGGCGACTCCCTGACCACCTCTCGCTGCTGGACGGCCGCTCGTGCGCGGCGCACCGGCCGGGGACGGCGGCGTACTTCGCCTGGCACCGGGAGAACAAGTTCACCGGGTGAGGGTCAGTCCCAGCGGTCGTCGTTGAGGAAGCGGGCGAAGCCGCGCCAGGAGTTGGGGCCCATCA # Right flank : TTGGTGATGCGCAGCCAGTTCTGGGCGCGCTTCCACATCAGCGGTCCGGGGACGCCGTCGGACTCGGTGCTGGTCTTGGGCAGGCCGCCGCTGCCGCTGCCGAGGTAGTCGAGCGGGTTGATGCGGGTGCCTGCGGGGTTGATCATGTGCCAGTGCACGTGCGGGCCGGTGGAGTTGCCCGAGCCAGGGGCGCCCGCGGCGCCGCCGGACAGGCCCACGGTGCCGCCTTGGGCGACGGTCGCGCCGTTGGCGAGGGAGAACTGCGACAGGTGCATGAACTGCGTCTTGTACCCGTTGGCGTGCGTGATCGTCACGGTGTGGCCGCCGGTGCCGTTGTCCGGCGTGTTGGTGACCCGGCCCGCGCCGGGGGCGGGCAGCCGGGTGCCGACGGCGACGCCGTAGTCGATGCCGCCGAGCGAGCCGCGGGCGATGTGCTGGGCCCACGTGCCGGTGATGGCGTAGCCGCTGAAGGGGTTGTAGAAGTCAGCCGCCGCGGCGGT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGTCGATGGGGCCGGTGTAGCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 446874-446171 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKQR01000007.1 Actinokineospora bangkokensis strain 44EHW Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 446873 28 100.0 33 ............................ GGTGGCGGCCCCGGTGACGTTGAGGGTGCCGCC 446812 28 100.0 33 ............................ CGCGTCGCCGCGGTAGGAGTCGGCGGAGATATC 446751 28 100.0 33 ............................ GGACTCCGAGGTCGGGTTGTCGCCACTGTGGGT 446690 28 96.4 33 ..........T................. CGGGTTCGCCGTGTCCATCGAGACCGAGGACGA 446629 28 96.4 34 ..........T................. CTGGGGGTCGGTGGCGCCGTGGGCGTCCCCGCCG 446567 28 100.0 34 ............................ GTCGGCGGACGCCAACGTCGTGTCGCTGGCCGAG 446505 28 96.4 33 ...........C................ CGCCTGCTGCTGCACCAACGAGGTCTACATCAA 446444 28 100.0 34 ............................ ACAGCGGCAGTTGCCCGACCTCGACACCAGCACC 446382 28 96.4 33 .........A.................. TCACCAGCACCACCTAGGACGAGGAGGGCCGGG 446321 28 92.9 33 ..C..............T.......... CTACGTCGACTTGGACGGCGACGCGGTCGAACT 446260 28 85.7 33 ......A....A....G.A......... CCCGAGGAAGAGCCCGCACTAGCCGGGCCGGAG 446199 28 96.4 0 ..........G................. | C [446190] ========== ====== ====== ====== ============================ ================================== ================== 12 28 96.7 33 GTTCTCCCCGCGTGAGCGGGGCTGGTCC # Left flank : GATGGCAAAGTTGAGTCCTTGTTCGTTGTCCGCGTGGTGGACCATGATGGCTCGTCCGGTCTTGGCCATCTCGACGACTCGGGTCCATATGAGGGTGCGGACGCGGGAGCTGAAGCGGCCGACGAAGACGCCCGGTGAGATCTCGAGCAGCCAGCGGGTCAGGTGCCCGCGTAGCCCGACGGGGCAGGCGGAGATGACGATGACGGTCATTCGGGGTCCTGGTCGTAGGCGACACCGCCGGGGACGTCGCGGCCGTTGTAGTCCCAGAGCATGACCACGTCGGGGTCCTCGAACGCCTCCGGGCCGTATTCGACGACCGGTTCCTGGTCGTCAGCGAGGAGGGACCTGATGTCGTGGACGCAGGTCTCGAGGAACTTGCCGTCCTTCATGCGGTCGCGGATGGCTCGGCGGGTTTCGGAGGGGATGTCGCCCACTCGCCGGGCGGCGATGTCGAACGCCGCGAGAATGGTGATCTCGGACTCGGGCGTGTCGAGCAGGTG # Right flank : CGACTGGACCGGCTCATGGGTTTATCCCCGCGCACCAGCCGTTATGCCACGCTTCCGCCGCGGTGGCAATGGCACCTGTACCGACATGATCAACGGTCGTTGCATCAGCGGGGCGAGATTCGGAGAACGTCCCTGCCCGCCATCGGCGCGCCCCGGATCGGTGTGCTTCGTGGGGAAGTCGGCCCGGGGGCACGCTCCAGACCGCCCGAAACGGCCCGTGACCTGCGCAAACCAGGTCACGGGCCGTTCGCGGTGTGTCCGGCTGTATCCGACGATTTCCTGCCAGTACCGGCTAGCTGTTCCCGTTGAGTTCCCGTGGGGACTACCAGCCCCACAGGGTGTCGATGCGTCCCAGGGCGGCGTCCTCCAGGTCGGTGACCACGTGGGCGTAGATGTCGAGCAGGACCTTGATCGAGTGCCCGGCCCATGCCGCGACCTGCGGCGCGGGCACTCCGGCGGCGAGCCAGATGGACAGGCAGCTGTGCCGTAGGTCGTAGGGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGTGAGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGTGAGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //