Array 1 9754-6878 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIHY01000008.1 Streptococcus suis strain LSS75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9753 32 100.0 35 ................................ TGATGACCTTGAGGATATTTTGAGTCAGAAAAGGC 9686 32 100.0 34 ................................ TGAGCAACTATATATCAAGGCTCTTTGCAACCAA 9620 32 100.0 33 ................................ TGATGTCATTGATGGTATACATGACCATAGACT 9555 32 100.0 34 ................................ CCAATCATTAAAGGATAATATAGATTATTACTTA 9489 32 100.0 35 ................................ TTTTGTCTGGTGTTGGTTTTCTTGTGGAGAAAACC 9422 32 100.0 35 ................................ TTTATTGGTGGTAAATACTGAAAAAGGTATCTACA 9355 32 100.0 35 ................................ TTAGTGCCTAATGACACTATAGGACTAGGTAGGAA 9288 32 100.0 33 ................................ TGGTCTGTTTACTGTACTGTATATATCTTTCTT 9223 32 100.0 34 ................................ TTTAAACATCTCCAACATATGTTGGATAGCTTTT 9157 32 100.0 33 ................................ CTGAAAATCGTGATTTTTCGGAAAGATGTAGGC 9092 32 100.0 34 ................................ GGTGGTTCGATAACCGTTGACGGAATTAAATATG 9026 32 100.0 34 ................................ CATTGTACTCAAAAGTATTATCATCTAACCAAGA 8960 32 100.0 33 ................................ AGTCTTAGCTGCTTTGATGACCTCAGGAGAGCG 8895 32 100.0 35 ................................ AGTAACCCGTTTTTGAACTGCGTCATAGTCAGAGC 8828 32 100.0 33 ................................ AGGTCAATTTTGACAGAAACGCTAGTCCCCATC 8763 32 100.0 33 ................................ TGAGAGCTGGCGTGCAAGAGCTTTACCTGCCTC 8698 32 100.0 34 ................................ TTTGGCTTTTTTGTAAAAATCTTTCTTAATTTCA 8632 32 100.0 34 ................................ AGAAATACGCATGAGAACTATACCTCAATGAACA 8566 32 100.0 35 ................................ TAAGTTTAGTCCCAGGTTTCTTGTCGTCAATGAAA 8499 32 100.0 33 ................................ AATACTTGAGGGCTTGATTTCTTCGTGAAATAG 8434 32 100.0 35 ................................ TCGTGTACGGAAGAGGAGGATGCGAAACAACTCAC 8367 32 100.0 34 ................................ TTCTTGTGACGGATTTTAAAACCTCTATTTTCTC 8301 32 100.0 34 ................................ ACCGACGAAAAAACAGGTAATCAAGTTGCAGGGG 8235 32 100.0 34 ................................ AATCAATTAGCGCAGGGGATAGAACGTATAACCA 8169 32 100.0 33 ................................ AATTTTGGTTAACGTTCGGCACTGCGACAATTC 8104 32 100.0 34 ................................ TGGGGTCCCTAATGCTGGGATTATGAATGACCAA 8038 32 100.0 33 ................................ ATCTTTCAGGAACTCGTTTTCCTTGAGTAACTG 7973 32 100.0 35 ................................ TACCGAGATAGAGCCTGTACAACCCAAACGCTCCG 7906 32 100.0 35 ................................ ATCATTGATTAATAATTATCTTGATGAAACAGAAA 7839 32 100.0 35 ................................ ACTATTTCAGAAAATTTAACAAATGCAATACAAAT 7772 32 100.0 36 ................................ ATCATTTCCTCCTAAAACGGTAAGCCATCGTCAGAA 7704 32 100.0 34 ................................ TATCCTTTTGAGATAAAGCAGTCGGTTTTCCATC 7638 32 100.0 33 ................................ ACTATTTCAGAAAATTTAACAAATGCTATACAA 7573 32 100.0 34 ................................ ATTTTCGCCGACCAAATTACGCTTAAATAGATAA 7507 32 100.0 34 ................................ CGTCGTTGCAAGTCGTCCAAGTTAGTTGGCACTG 7441 32 100.0 36 ................................ TGGTTTAGTTGCTTCGTCCAATTGCTGAGTCAAGTC 7373 32 100.0 33 ................................ TTTTTGATTAGCTAGTAATTCTTGGTAAGCCTG 7308 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 7240 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 7174 32 90.6 34 .........C...C..........G....... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 7108 32 84.4 34 .......T..T..C.A........G....... ATTATACAGGTGGTTTACAGGTTCATACAGGAAC 7042 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 6976 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 6909 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 44 32 98.0 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAATTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : AACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //