Array 1 49617-48582 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVX01000016.1 Acinetobacter ursingii strain TUM15495 sequence016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 49616 26 100.0 35 .......................... ATCTACAGCAGCACCTAAATCCTTTGTTGCATTGC 49555 26 100.0 34 .......................... ATCACAAAAGCAAAGAATTGATGCGAGATGATGC 49495 26 100.0 34 .......................... TTTTTCCAAAGGAAAGCTGTTGATCCGCAATGGC 49435 26 100.0 34 .......................... TGAGTATTACGAAAGCCTAGAAATGCAAGGAGGC 49375 26 100.0 34 .......................... AATTCCAGCAATCGGAGCAGCCAAACCTTGAAGC 49315 26 100.0 34 .......................... AGTTTGACCGCCATTAAAATATTCATGAATCCGC 49255 26 100.0 34 .......................... ATGTATCTGGCACATGCCGTATCGAATAGTTCGC 49195 26 100.0 34 .......................... TGTGGAGTATCCCTCTGATATTGCAAAATGTTGC 49135 26 100.0 34 .......................... AGAACGTCTCAGTCATTGAAGATCATCAACACGC 49075 26 100.0 34 .......................... TTTTGATTGGCGTGATCTGCCAAATGGTTCTGGC 49015 26 100.0 34 .......................... TTCTGGAATCAGCAAAAGCTTTCCACCTTCAGGC 48955 26 100.0 34 .......................... ACACTGTTCTGGATTTTCTTCACACTTAGAAGGC 48895 26 100.0 22 .......................... AAGAAGAATGGGATGCGGCTGT Deletion [48848] 48847 26 100.0 34 .......................... TGAAAATAGCGATTGGCGTGATACGCCTGACGGT 48787 26 100.0 34 .......................... AAAGTATCGATCGCATTGCTAATTCAGAACGTGT 48727 26 92.3 34 .............A....T....... GCAACGAACAGTTAGAGAGCAAATGCTCACGGGC 48667 26 92.3 34 ..................T......G ATTGGAAATGGACAAGTTTCAAAAGTGGCGCGAT 48607 26 76.9 0 .................AT...TTTT | ========== ====== ====== ====== ========================== =================================== ================== 18 26 97.9 33 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : TAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATTATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAACTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATAGC # Right flank : CGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCACCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCCGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTCATAAAGTCCTTTCATTTTGCCTATGGGAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGCCCTACTGTACTGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45523-28862 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVX01000020.1 Acinetobacter ursingii strain TUM15495 sequence020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 45522 30 96.7 30 ............................C. TAATCGATGCCAACCCATTGATAAAAAATC 45462 30 100.0 30 .............................. CATGCTTTTGGTACTTGCGAAATCTCATCT 45402 30 96.7 30 ............................G. AAAGATGGGCGATATAGCTACTACCTTAAT 45342 30 93.3 30 ............................AG TAAGCTGACATATTTTTAAAAATATTTGAT 45282 30 96.7 30 .............................G CGCATGGAAACATCACTGGCACATCTTCTA 45222 30 93.3 30 ............................AC GTGGGTATTGTTGTTGCCTCAATTCAACCA 45162 30 93.3 30 ............................AC CATAAATCAATATTCCGATCTGCAAATGAC 45102 30 100.0 30 .............................. GCGCCTCTTTGCTTGGCGGCTCTGGAAGTG 45042 30 96.7 30 ............................G. CAACAATGCTAGTGCGTCCCACATCTACAT 44982 30 93.3 30 ............................AG GTAACTCGGCAACATCGCGAATGATATTCT 44922 30 96.7 30 .............................C GAAAACATCACAAACGAGCATTACGATGAT 44862 30 100.0 30 .............................. TCATTGATCAAAAAATCTCGGCATATTGAT 44802 30 93.3 30 ............................AC ATAAGTGGGCATGGAAATCAAAAACAGATT 44742 30 100.0 30 .............................. GAATCCGTTTGCTCTGGCAACAGATTCAGT 44682 30 93.3 30 ............................CG AAAAACCAAAAGCCACACGTGCACACTGAA 44622 30 96.7 30 ............................C. TATGCAGCAGATATTGAGCCACCGCTGAAA 44562 30 96.7 30 ............................A. CACGCCACCCTATCTCTTATTACAACCAAT 44502 30 93.3 30 ............................AG ATTTGGCAGTTGGTGACAATGCTGATCTTG 44442 30 100.0 30 .............................. CAAGAAAGTCATGATTGCCTTGGTTCTCTT 44382 30 96.7 30 ............................A. TGGTTCGTATCAAGTGGCACAACAAAATAT 44322 30 96.7 30 ............................A. TTGATTGAGGGTGGTTATTGGTCTGATCTG 44262 30 96.7 30 .............................C ACGCGGGAATCTTTCAATGCCTGTTTGTTC 44202 30 96.7 30 ............................A. ATAAAAATAAAAAGTCCGAAGATGAAATGA 44142 30 96.7 30 ............................C. CAGCAGGAGGATTATAAGCAGGATTTAAAC 44082 30 96.7 30 ............................G. GATCCTATGGTTTTTAAAGACGGAACAATG 44022 30 96.7 30 ............................G. TGTCATCGCGAGTGATGAATTCGCGGAAAG 43962 30 100.0 30 .............................. TCCAAGACCTAAGTGATATGACTTAACATA 43902 30 100.0 30 .............................. TGAAGTGTATGTGTTGAACATGCTAAGTAA 43842 30 93.3 30 ............................AG TTGCCGATGCAGCGCCACGGTTTCCAGTTG 43782 30 96.7 30 .............................A TTCCATCCACGCTTTGCAGGAATCACATCA 43722 30 96.7 30 .............................C AAGCTCAGTTGAGTAACCATCCCATTCATT 43662 30 96.7 30 .............................G AACCCAAGCTAATCGTTGCGGTAATAGCAT 43602 30 96.7 30 .............................G ATAGTGATTGCCTGGTTGCTCAGTCGGCAG 43542 30 93.3 30 ............................GC AACCACATTAACGCAATCTTTGATGGGTTT 43482 30 96.7 30 ............................A. ACTTCACAAGTAGCGGCTTCAAAGCCTCAA 43422 30 100.0 30 .............................. AAATGGGGCGTTGTCATTTCTGGAGTAATG 43362 30 93.3 30 ............................GC CCAAGAAAGCGATCGTATCAAGATACTTGC 43302 30 93.3 30 ............................AG ACAGAACTGGCACTTCACCAAGCTGTCAAT 43242 30 100.0 30 .............................. ACTACGGCCTTGCACCGCACGTGCACACAA 43182 30 96.7 30 .............................C AACGCTTTTTCAAACGTATTCGCATAGCCA 43122 30 96.7 30 ............................C. GAAAAATGAGAGATTGGAGGCTATACAATC 43062 30 96.7 30 ............................A. GCTGATTTCAAACTGGACGATTGAGCAGCT 43002 30 96.7 30 ............................G. ACCAAAATAAGCTAGGTGTGCTTACAGATG 42942 30 93.3 30 ............................AG AATATTGCGCGTATATAAATGCATTGAGTG 42882 30 100.0 30 .............................. ATAAGTCATTTATAAGGGGGATTAGATTAT 42822 30 96.7 30 .............................A TGAATGGGCATAGTGATGATGGTTTTGAAA 42762 30 96.7 30 .............................C ATAAATATGCAATAGAAATTCATCTTTGAA 42702 30 96.7 30 ............................A. TCAATCACAGCCAAGCTCATCTAATCCAAC 42642 30 93.3 30 ............................AG AAGAATTACTTACAGAACCTTTATTTTTAG 42582 30 93.3 30 ............................AG ATCGGCAACCTGTATTCAGTAAAAGCAGAA 42522 30 96.7 30 .............................C TGGACACGTGTAGAGGTCGAGTACAAAGCT 42462 30 100.0 30 .............................. TCCAAGACCTAAGTGATATGACTTAACATA 42402 30 100.0 30 .............................. TGAAGTGTATGTGTTGAACATGCTAAGTAA 42342 30 93.3 30 ............................AG TTGCCGATGCAGCGCCACGGTTTCCAGTTG 42282 30 96.7 30 .............................A TTCCATCCACGCTTTGCAGGAATCACATCA 42222 30 96.7 30 .............................C AAGCTCAGTTGAGTAACCATCCCATTCATT 42162 30 96.7 30 .............................G AACCCAAGCTAATCGTTGCGGTAATAGCAT 42102 30 96.7 30 .............................G ATAGTGATTGCCTGGTTGCTCAGTCGGCAG 42042 30 93.3 30 ............................GC AACCACATTAACGCAATCTTTGATGGGTTT 41982 30 96.7 30 ............................A. ACTTCACAAGTAGCGGCTTCAAAGCCTCAA 41922 30 100.0 30 .............................. AAATGGGGCGTTGTCATTTCTGGAGTAATG 41862 30 93.3 30 ............................GC CCAAGAAAGCGATCGTATCAAGATACTTGC 41802 30 93.3 30 ............................AG ACAGAACTGGCACTTCACCAAGCTGTCAAT 41742 30 100.0 30 .............................. ACTACGGCCTTGCACCGCACGTGCACACAA 41682 30 96.7 30 .............................C AACGCTTTTTCAAACGTATTCGCATAGCCA 41622 30 96.7 30 ............................C. GAAAAATGAGAGATTGGAGGCTATACAATC 41562 30 96.7 30 ............................A. GCTGATTTCAAACTGGACGATTGAGCAGCT 41502 30 96.7 30 ............................G. ACCAAAATAAGCTAGGTGTGCTTACAGATG 41442 30 93.3 30 ............................AG AATATTGCGCGTATATAAATGCATTGAGTG 41382 30 100.0 30 .............................. ATAAGTCATTTATAAGGGGGATTAGATTAT 41322 30 96.7 30 .............................A TGAATGGGCATAGTGATGATGGTTTTGAAA 41262 30 96.7 30 .............................C GGGGATATTTACCGCCCATAACTTTTCCAT 41202 30 96.7 30 .............................G TTTATGGCAAGCGTTGGTTTATTGATAATG 41142 30 93.3 30 ............................AA CTCAAAAAACAACTCTTGAGCTTCCCGACT 41082 30 93.3 30 ............................AA CTTTGTGAAATAGGATCTCGATTTCTAAAG 41022 30 100.0 30 .............................. TACCTGCCCCGCAAGTTTGTTAACTTGGTA 40962 30 93.3 30 ............................AC CTAGTCCAGAGAGATGGAAAGAACGTAGTC 40902 30 93.3 30 ............................AG GTTGTTCTGTGGGCAGGAAGTCGCAAGACA 40842 30 96.7 30 .............................G TGTGAATGCCGCTCTAGTTGTTCTCAGCAA 40782 30 93.3 30 ............................AC ACAGCCAAAGGCATGTAGCTTTTTGTTCTG 40722 30 100.0 30 .............................. ATACCGTGCGTATTGGGCCACGGAAAGTAA 40662 30 96.7 30 .............................C ACACAGACGATATTGTTAATAACTTTCCAA 40602 30 96.7 30 ............................G. TCATTGTTGTTGACGTTTCAATCGGCAGAT 40542 30 96.7 30 ............................A. TAACTTGACCTATGCGTTTAAAATTAGCAC 40482 30 96.7 30 .............................C ACACAGACGATATTGTTAATAACTTTCCAA 40422 30 96.7 30 .............................G ATACAGATCAGCCCGACATTGACGATCAAG 40362 30 96.7 30 .............................A GTGAAGTTGCTTATGATCCTTCCGATCCAT 40302 30 100.0 30 .............................. AAAAATCAGGTATGAGAAAAAAGATAATGT 40242 30 96.7 30 .............................A TGCGATACGTAAGTTATGAGGATTGAAAGT 40182 30 100.0 31 .............................. TTTATTGCAGTGATTAGCCTGCTTTTTTGAT 40121 30 100.0 30 .............................. TTTATTGCAGTGATTAGCCTGCTTTTTTGA 40061 30 100.0 30 .............................. TTAAATATTGGGTATCAAGATTAAATGGAA 40001 30 96.7 30 ............................G. CAATTTTTGTTCCCTGTTGGTCATACGCTG 39941 30 93.3 30 ............................AG AACCTGGCGTCGCAGATAAGAAGTTGATCA 39881 30 96.7 30 ............................G. ATACGTTATGACCTTGCATGATCTTTGCAG 39821 30 96.7 30 .............................A CTCATTCAGATTTAAGGATGACCGAGAAGC 39761 30 96.7 30 ............................A. CCTGCACCATCCAATAATAATTGAACAGCA 39701 30 96.7 30 ............................G. AATAAAGCTTAGATTTTTAATACTTTATGG 39641 30 96.7 30 ............................A. ACGCATTGATTGTTCCCAACCAAAGATATT 39581 30 96.7 30 .............................A ACTCCAATTTAACTGGGGGCAATATGTCAA 39521 30 96.7 30 .............................G AGTAATGAACAGAAAATCATAGCCCTTATG 39461 30 96.7 30 .............................A ATTTATCGCATAAGCGTTTTATGTTCTGTC 39401 30 96.7 30 .............................C ACGTGTACGGTCACGTGGTTGTAGTTCTGC 39341 30 100.0 31 .............................. AAACTGGGTGGTGCCTGATTTTCATTTAGAT 39280 30 93.3 30 ............................AC AGTGGAAGATGATCAAACACAAGACCAAGC 39220 30 93.3 30 ............................GC CTCAATTACTGCCATGCCTTGCTCATCAAG 39160 30 96.7 31 ............................G. GAAAGGGGGCTTGCCCACTTTCACTTTATTT 39099 30 100.0 30 .............................. TATAAAAACTTTGAAATCTATTGTCTGTTT 39039 30 96.7 30 ............................C. ATGCAGGCACGACAGAGGGGGGCATGAATT 38979 30 96.7 30 ............................G. TCAATGCAAAAGTAGACATGGAAATTGTGA 38919 30 96.7 30 .............................A CTTATGCCTGATCCTGAGAAAAAGGAACAG 38859 30 93.3 30 ............................AG AATCTCGCATTCTAGAAATAAAAGAATATC 38799 30 96.7 30 .............................A AAGAGAATGGGTTAGCCAATGGGTATTTAC 38739 30 100.0 30 .............................. GCAAGCATTATGATTGTTGGGGCGCATGAT 38679 30 93.3 30 ............................AA GAAGAGCAATTGAAAATCCAATCATGCATG 38619 30 96.7 30 ............................A. AGATGAAATTAAAAAGTATTTATGTATTTG 38559 30 96.7 30 ............................A. TGTAGAGTTCAGCATTGTGAATGTTGTTGT 38499 30 96.7 30 ............................G. ATGTCGTTCAGAGTAAAAACACCCTTCGTC 38439 30 96.7 30 ............................G. CTACCGCCTGATCCAGCTTTGCACCCCTGT 38379 30 93.3 30 ............................AC CTGAACTCAGTCAAACGCCGTTATCTACCA 38319 30 96.7 30 ............................A. AATGAACTCCATCGTATGGAAAGCCCTGAT 38259 30 100.0 30 .............................. AATCCCCGCGAAACGACAAATATCTAAACG 38199 30 93.3 31 ............................AG ATTCGCTAGAAGTAAACACAATATACTGGCT 38138 30 93.3 30 ............................AA ATATGACGGGGCATTACTCAGTTCATCTTT 38078 30 93.3 30 ............................AA TAGTAAACAAATGTATTGCTATCAAGAGAA 38018 30 100.0 30 .............................. GTTCTTTTTTTGTTTAACTTCGCAGAAGTG 37958 30 100.0 30 .............................. TACGATCAACAACTGGATCAGCCAATTGAA 37898 30 96.7 30 ............................A. TGATCAATGACCATTGACCATTTTCAGGTT 37838 30 93.3 30 ............................GC ATCTGCTGCGGTTGAGTCGTACAAATCAGC 37778 30 100.0 30 .............................. TGACATACTCACCACGTCTTACAATCAGCA 37718 30 93.3 30 ............................AA ACCAATTCGCGCTGAAATGGATATAGCTTA 37658 30 96.7 30 .............................G AATAGCTCGGTTTAATTCTGGTGTTGAGCC 37598 30 93.3 30 ............................GA AGCGACCAGTGTTGCAGCAATGTATTTAGT 37538 30 100.0 30 .............................. CACTCACTGTCTTATTGAATTTCTGGCGAA 37478 30 100.0 30 .............................. TAAATCAGCCAAATAGTTTTGAATCGTGTT 37418 30 96.7 30 .............................G AGTTTTCATAGGCAGTTGCAGCATCATTCA 37358 30 100.0 30 .............................. TGATGTGGTTGCTTGGTTACTCGGGTGAAA 37298 30 96.7 30 ............................A. AGGCATTGGCTTCTTCGATTGCGTGTTTTA 37238 30 93.3 30 ............................AA ATGTCCCCTGCGGATAGTCACGTAGAAACG 37178 30 96.7 30 ............................A. CAAATCGTTTTTGGCCACATCAAAGATCAA 37118 30 93.3 30 ............................AC TTATCGTACATATTCAAGAAGACAGTAAAG 37058 30 93.3 30 ............................GA TACGTGTGATGGTTTATATCGCGCAGACGA 36998 30 100.0 30 .............................. GTGCGAGTGCGCTGCCTGCTTGGGCTTGAC 36938 30 96.7 30 ............................A. CATAAGGCACACCCGCATGCAAGGCTTGGT 36878 30 93.3 30 ............................AA TTGAACAACAAGTTATCAATATTGTTCGCA 36818 30 96.7 30 .............................A TCAATCAGGTATTGTTAATATAGGATTAAT 36758 30 93.3 30 ............................AA TCTTTTTCTTTTCCGCACTTGCTGCACTTT 36698 30 93.3 30 ............................GA TTCGCATGTAACCAAATCCACTAATGCAAA 36638 30 93.3 30 ............................AA GAACAAAGACTTTTTAGGGGTCTGTGAGGA 36578 30 93.3 31 ............................GA TGTTTTTTAGCGCATCTGCAAAGCTGAATTT 36517 30 93.3 30 ............................AA CCAAAGTTTATTAGTATCATTTTACACCTC 36457 30 93.3 30 ............................AC AAAGACGATCATTCACGTATACAGATAGAC 36397 30 100.0 30 .............................. TGAATGATGTTTCAATCTATGCTTTGTTAC 36337 30 96.7 30 ............................A. ATGGCTAAGTGTACTGGGTGATGTATGAAG 36277 30 93.3 30 ............................GA GAAACATAATTGCGGTTGATCCAGAAAAGC 36217 30 96.7 30 .............................A ATAAGCCAATTGGTGGCTGATATGACTGAG 36157 30 93.3 30 ............................AA TATCAAGCATCAATACGGTAAATACATCAA 36097 30 96.7 30 ............................A. TAGTTGGATCAAGCGGAATTTCACAATACA 36037 30 100.0 30 .............................. CATTTCTTTTAATCGTGCCAAATGTTCATC 35977 30 100.0 30 .............................. TTTATATAAAAACAATTTTTCTGTTGAACA 35917 30 96.7 30 ............................A. ATTTTGTCATCACAAAGACGGCCATCTTTT 35857 30 96.7 30 ............................A. TAAGAAATGGCAATAATGATGCTGCACTGG 35797 30 100.0 30 .............................. ATGTTGAAGGCATTATCGCTGTTGATCAAA 35737 30 100.0 30 .............................. TAAATTTTAACACACATACAGAAGCGGTCA 35677 30 93.3 30 ............................AA TAAAGACAAGATCATCTACAGATGATTTAG 35617 30 100.0 30 .............................. TAAATACTTTGAAAACTGGTGCTTGGTAAT 35557 30 100.0 30 .............................. TAAATGATGTGTCGATCTATGCCTTACTAC 35497 30 93.3 30 ............................AA GAGATTTGCAACGTGAGGCAGGCAAATCAT 35437 30 100.0 30 .............................. CTGAAACTTCTATCCAAGAAATATTTGTAC 35377 30 96.7 30 .............................G CATTTTCAAAAGATGATTTGCTCAAAACTT 35317 30 93.3 30 ............................AG AACCATTTCCGTTGCCGGAACCATTACTTG 35257 30 96.7 30 ............................A. ATGCTTGGTATGTTCATGGAAGCATTTCCA 35197 30 93.3 31 ............................CG AACGACGCTTAATAGAGCGGGGCACACTACT 35136 30 100.0 30 .............................. TGATAACTAAGGGTTTTTCTTTGGAACTGG 35076 30 96.7 30 ............................G. ACAAGAGACTCGCAGCGTATTTTTTAAAAA 35016 30 93.3 30 ............................AA GAAGATGCAAAACGTCGTTTTATTCGCGAA 34956 30 96.7 30 .............................G TAGGAAGTTTGAAATGTGGTTCTGTGCCTA 34896 30 100.0 30 .............................. ACCGTATTTAAGGAATAAATCATGCCTGAA 34836 30 93.3 30 ............................AG AAGTTTTATGAGACTTGAGGCTAATACTTC 34776 30 93.3 30 ............................AA CCAACACTAGTATCGTCATAATCATGATTA 34716 30 93.3 30 ............................AG TGAAACCAGCCCACTACGCATTTCTTCACG 34656 30 96.7 30 ............................C. AATATTTTTTCTATAATTAAATTTTAAGTT 34596 30 93.3 30 ............................AG AATCGTCTAGCAATTGACAATCGGTTGGCG 34536 30 100.0 30 .............................. GCTTTTTACATATTTGTAAACTAGATTTCT 34476 30 93.3 30 ............................AA TTTGAAATAACTGTCGGATCTATTTCTAGT 34416 30 93.3 30 ............................AA AGTCATCCCCTGCTGATCAAAAACCAACAG 34356 30 96.7 30 .............................A AGAAAAACCCTTAGTTATCAAAAGCTTATA 34296 30 93.3 30 ............................AG TCTTCACGATCTATCCCGATCGGTTCAATT 34236 30 93.3 30 ............................AG AATCGCTTTTACCCACAGAACGCAGATTAT 34176 30 100.0 30 .............................. TTGTCACAGTCACATCAGTTGGATTTGAGA 34116 30 93.3 30 ............................AC ACTGTAAAAATCAAAGACAAACATAAACTA 34056 30 93.3 30 ............................GA TCAACTCAACAGAAACATTATCAGGATGCA 33996 30 93.3 32 ............................CA TGACCACAAATTCTTTTTACAACTTTTACTTT 33934 30 96.7 30 .............................A TCCATTAAAAATTAAGCCCCTTATAGGGGC 33874 30 93.3 30 ............................AA AAAGGAGATTGATAAATAGAACCTTCAATC 33814 30 93.3 30 ............................AA TGATATTGAAAAATGAATTTTAACTATTGT 33754 30 100.0 30 .............................. TTTTATCTTCAATAACCGCCAAAGCCGTAT 33694 30 100.0 30 .............................. TGGCTTATCGCTGGTCATCAAGAATGATTT 33634 30 96.7 30 .............................G TAGTTGTTGTTGTTGTATTACCATTTGAAT 33574 30 100.0 30 .............................. TTCGCGGTTATTTTTTGCTATCGCAAAGTA 33514 30 96.7 30 ............................G. GTACCGATTTTTCGAGTCGGCGACATCGGC 33454 30 96.7 30 ............................A. GTTTGACTTGCTCATTCATTTTCTATCTCG 33394 30 96.7 30 ............................A. TCACAGTGCCCGTAGCGTCACCAGAAATTG 33334 30 93.3 30 ............................AG TCATAGAATGGCTTTGTTTTTAATCTATGG 33274 30 96.7 30 ............................A. TTTTAATAACAACAAGATTACTGTTTGGAC 33214 30 96.7 30 ............................A. CTGGAAACCGCCTAACGTGTCTTGGAGATC 33154 30 96.7 30 .............................G TTCCCAGACAGCTCAACCATGGGTGCTTTC 33094 30 96.7 30 .............................A ATTGTAGTGATTTTGAATTTTGTGATTAAT 33034 30 96.7 30 ............................A. AAATATCTATGGCTTCATAACCAATATCAT 32974 30 100.0 30 .............................. TTTAACTAAAAACTTAATCTCTTTCGTTTT 32914 30 93.3 30 ............................GA TCTTCTGATTACTTGACTTGTTGTTGTAAG 32854 30 100.0 30 .............................. TATCGATTTTGCTGCATCACTTAAATGTTG 32794 30 96.7 30 .............................A AATGAGTTAAAAAGATGGAAACAATCGGTA 32734 30 90.0 30 ..........A.................AG TGGCCTCATAAATGCTTGCGCCAGTAGCGT 32674 30 96.7 30 ..........A................... TATGCGGAACGATATGATCGACCACCGTAG 32614 30 90.0 30 ..........A.................AG TAATTAACGCTGGGCTAGATAATGTTTCAC 32554 30 90.0 30 ..........A.................AA TGGATCTAATTCAGCAAGCTCATCATTGTT 32494 30 90.0 30 ..........A.................AG ACGTAAAATATCGTCATGCAGTCGATTTCG 32434 30 93.3 30 ..........A.................A. TAAGAGCATCGTCGCATAAGTATGGCGTGC 32374 30 90.0 30 ..........A.................AG ATGAAGAAGCAGACAATCAACAAGGTATTT 32314 30 90.0 30 ..........A.................AA GTAAAGAAGTTGGAGAAAAATTGGTTGAAC 32254 30 90.0 30 ..........A.................AG TTCGCATAGTTGGAGGCTGTAAGGTTGGTG 32194 30 93.3 30 ..........A..................C AATTAACTCCATGACTGCATAGGCACCAAT 32134 30 93.3 30 ..........A..................C CAACAGACGCGGAATCAACGACAAGTTTAT 32074 30 93.3 30 ..........A..................G TTTTGCTCAAATTGTCGAACCATTGCACAC 32014 30 90.0 30 ..........A.................AC ACAGAATTATTTATACGAATATTGTTGGTT 31954 30 96.7 30 ..........A................... GCCTTGTCCACCTTTTGAATAAAGCAGATG 31894 30 90.0 30 ..........A.................AG ATAATAATATCCCTGAAGTTGAAGACTATA 31834 30 90.0 30 ..........A.................AG GCTCTTTTAAAACGGCTTCTACAATTGAAC 31774 30 90.0 30 ..........A.................AC TATAACCAAGTGGTATAGGGAGGAAATGAT 31714 30 93.3 30 ..........A.................A. ACATGTGCTGTATTGTTAAATTGCTAAGAA 31654 30 93.3 30 ..........A.................A. AAGGATTTTTAAATGAATATTGAAGAATAT 31594 30 90.0 30 ..........A.................AA TAACTTAAAGCATCTGGTAATTTCATTGAT 31534 30 93.3 30 ..........A..................A ATCTCTTGCTCAGTTATCATTCAACCTCCC 31474 30 96.7 30 ..........A................... ATATTTTCTCTCGACAATAAAAGGAAATAA 31414 30 93.3 31 ..........A.................A. ACCACTCAAAATCATATCCACCTTTTTCAAT 31353 30 90.0 30 ..........A.................AG ATATTAATCACGAAAGGTCAGGGTTTAGAA 31293 30 93.3 30 ..........A..................G TACCAGAACCGTCACCATTGCCATCCCCTG 31233 30 90.0 30 ..........A.................AC GTTAAGACAAATTCAGGAATTTGTAATCAA 31173 30 96.7 30 ..........A................... TTTCTGAGCAGTTCGTATGCTGCGATCAGG 31113 30 90.0 30 ..........A.................AA ATTATTGCAAGGTCATAATGTTTTTGCAGA 31053 30 90.0 30 ..........A.................CA GTCTTGTTACCGCCATTAAGTTACACCGAA 30993 30 90.0 30 ..........A.................AG TGCATCTGCTCATACGTCAGTACAGTTCAA 30933 30 93.3 30 ..........A..................A ACGCCTATAATAATTATTGGTCACTGTTAG 30873 30 90.0 31 ..........A.................CA AAAATTTGAGGAGTAGCTACTCATGGCACGT 30812 30 90.0 30 ..........A.................GA TAACCCAGTGTGGCACTGGTTAGCTATTGC 30752 30 96.7 30 ..........A................... ACCGAGCAATTTAGCAACATTTGCAGCCGT 30692 30 93.3 30 ..........A.................A. ATTGGTCATTAATACGATCGACAATTTCGT 30632 30 93.3 31 ..........A.................A. TTCACGGCAAATAGGGGCGTAGTTCTTCAAT 30571 30 90.0 30 ..........A.................AA TAGAAGCTGGACAGGTGTTTAATGCTTGCA 30511 30 90.0 30 ..........A.................AA AAAGAGGCTAATTGTTAGCCTCTTCAGAAA 30451 30 93.3 30 ..........A.................A. TTAGCATCCCTAATGGCAGGGCAATATATT 30391 30 90.0 30 ..........A.................AA TCGTCACGAAATAATACAATCTGATATTTT 30331 30 86.7 30 .......A..A.................AC ATCATCCAGTGTAGCCAGTTGTTTCTCGTA 30271 30 93.3 30 ..........A.................A. ACTCAGGTGCTTGGCAGAAAAACGATGAAT 30211 30 90.0 30 ..........A.................AC TAATGCGACGAAATATAACGTTACGCCATA 30151 30 93.3 30 ..........A.................A. GCGCGACTACACCATTGCCGCGTTCTCTGT 30091 30 90.0 30 ..........A.................AG TCGAAAAAATCAGAAACTTTTTCAAAAAAA 30031 30 93.3 30 ..........A..................A GACCCTAGCCCCTACGGGGGCTAACTTATT 29971 30 96.7 30 ..........A................... TTTATCAGCTTCAGAGATCACGTAGTAAGA 29911 30 90.0 30 ..........A.................AA TAATTCGTGGTGTAACTCCTAGAGAGGCTT 29851 30 93.3 30 ..........A.................A. GAAAGTGGCATCTTTGTTGTGTACTAAGTA 29791 30 90.0 30 ..........A.................AC TTCTAAGTACAACTAAAACACCGTAATTAT 29731 30 96.7 30 ..........A................... TATTGTGCGTTTAGATGTGCTGTCATAGAT 29671 30 93.3 30 ..........A..................A ACACGATTCATTACATGGAGCGTAACCACA 29611 30 96.7 30 ..........A................... TCAAGCTTCGCTTATGGGCATTCCGAGTGA 29551 30 93.3 30 ..........A.................A. TCTCAACGTCCTCGGCGTATTCGTTTTCGT 29491 30 93.3 30 ............................GA ACACGCTGAAAAGCCATGGATCCGCGACAT 29431 30 96.7 30 .............................G ACGATTCTCTTTTTGCTGCTCATTTTGAAT 29371 30 96.7 30 .............................A TACCAACATTTTGAAGATCAACATATTCAG 29311 30 93.3 30 ............................GA AAGCAATGGATAGAATAATTCGTAATTCGT 29251 30 96.7 30 ............................A. TTGGCAATGTTACAGATGAGTTCTGCAAAA 29191 30 93.3 30 ............................AA CATACCCAAAAAGTCTTTGATCTTATTGAT 29131 30 93.3 30 ............................AG CAAGCAATAGTGAGCCAACCTTATCTGTTA 29071 30 96.7 30 .............................A TCCCCAAACGAAAGCAAATTCATGCGTATG 29011 30 100.0 30 .............................. TAAGCTGCTGAATCGCCCACATCTTATTGC 28951 30 86.7 30 ..........A.......T.........GA TCCAGAAGGGGTACAACCGATTAAGCCTTT 28891 30 93.3 0 ..........A..................G | ========== ====== ====== ====== ============================== ================================ ================== 278 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCTGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : CAAACGATGTGTAAAAGTTTAAGCGGATTGATTCACGAGACTAGAGTATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCACTG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //