Array 1 3895634-3896142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059963.1 Pectobacterium brasiliense strain IPO:3649 NAK:375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3895634 28 100.0 32 ............................ TGGTGCCGCCATGTTTTGAGCGGACCATACCG 3895694 28 100.0 32 ............................ CGACACATCCGCCACACGCCCGTCGGCGCTGC 3895754 28 100.0 32 ............................ ACACGCTGTGCGCGTTGATTGCGCAGCACTGG 3895814 28 100.0 32 ............................ GTAATACTGGGATCGGATTTCGTAAACAAAAT 3895874 28 100.0 32 ............................ CTACCGCGCCCTTGAAACGCTGCGTCGTATTC 3895934 28 100.0 32 ............................ GTTCACCATATTTCCCTGCTAATGAAATCCGT 3895994 28 96.4 32 ................A........... TGAACTAGTAATGGCGACAAAACAGATAGTCT 3896054 28 96.4 33 ...........C................ ATCGATATTAATGTCTACATATTCGCGGAATGA 3896115 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCTCCTCCTCCTTAAAAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGACTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAGGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCACTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3903536-3902486 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059963.1 Pectobacterium brasiliense strain IPO:3649 NAK:375 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3903535 28 100.0 32 ............................ CTTGCCTGACGGGTTGCGGCACGCACTCGAAA 3903475 28 100.0 32 ............................ GTCTGCTGCAAACAGACTGGCAAACATACCCG 3903415 28 100.0 32 ............................ AGTCATAATACCCATGCGGAGCAGAGGAATTT 3903355 28 100.0 32 ............................ AGCGCTCGTTCCATCTCATCAATCGCCGGGTC 3903295 28 100.0 32 ............................ ATGAGCATGACATACACCCGCAAATCGGCGAA 3903235 28 100.0 32 ............................ TGAGAAATACTTCACTGAGGTTGAAGGTATGG 3903175 28 100.0 32 ............................ ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA 3903115 28 100.0 32 ............................ GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT 3903055 28 100.0 32 ............................ TACCTGAGGATTGTCAGTCCGAAATCCGGTAT 3902995 28 100.0 32 ............................ AGGAGCAGTGATACCAGTTATCAATGAAGGAT 3902935 28 100.0 33 ............................ AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT 3902874 28 96.4 32 ...........C................ TGGAATAAATACGTCGCCGATGCCAACTTTAC 3902814 28 96.4 32 ...........C................ ACGCCAGGCAACTAGCGCAACTTCCACCTGAT 3902754 28 96.4 32 ...........C................ ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA 3902694 28 96.4 32 ...........C................ TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA 3902634 28 96.4 33 ...........C................ GATATGCCGATGATCCGATTTAAAACGATTAGT 3902573 28 96.4 32 ...........C................ ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC 3902513 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3912482-3913109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059963.1 Pectobacterium brasiliense strain IPO:3649 NAK:375 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3912482 28 96.4 32 .................T.......... CGGCGCTGAAAGCCTATAAAGGACGCCAGAGC 3912542 28 96.4 32 .................T.......... TTGACTGGACGCAGCGAATTAAAGAAGACGGT 3912602 28 96.4 32 .................T.......... CGCCGCGAAATGTCACCAACATAAACCATAAC 3912662 28 100.0 32 ............................ AATGGAAAATTGCTGCGATGTCGGCCATCACC 3912722 28 100.0 32 ............................ TGATTAGAAAACGTCTGTACCATCTGGAAAAA 3912782 28 100.0 32 ............................ ATACAGAAAGGCTTCATTAGCCGGCCGCTGTT 3912842 28 92.9 32 .......A...C................ AGCAGTTGTAGAGAGCTGGAGGGTGGTTGCAT 3912902 28 96.4 32 ...........C................ TGCCACCGGACCAGATGAAGGGGACCGACAGT 3912962 28 92.9 32 ........T..C................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 3913022 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 3913082 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAGGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : CTTGTCGGGATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //