Array 1 107773-106225 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLV01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA31 strain SGSC 2211 SEEHRA31_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107772 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107711 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 107638 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107577 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107516 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107455 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107394 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107333 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107272 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107211 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107150 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107089 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107028 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106967 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106906 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106845 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106784 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106681 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106620 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106559 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106498 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106437 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106376 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106315 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106254 29 96.6 0 A............................ | A [106227] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTATGTGTGGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 264666-265791 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLV01000034.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA31 strain SGSC 2211 SEEHRA31_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264666 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 264727 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 264788 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 264849 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 264910 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 264971 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 265032 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 265093 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 265154 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 265215 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 265276 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 265337 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 265398 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 265459 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 265520 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 265581 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 265642 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 265703 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 265764 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 282050-282457 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLV01000034.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA31 strain SGSC 2211 SEEHRA31_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 282050 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 282111 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 282172 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 282233 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 282306 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 282367 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 282428 29 100.0 0 ............................. | T [282440] ========== ====== ====== ====== ============================= ============================================ ================== 7 29 100.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCGGCTCTGTGTTGGGAGTCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //