Array 1 70691-69623 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNQH01000022.1 Serratia marcescens strain 13F-69 CONTIG_23_length_136302_cov_36.789649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70690 29 100.0 32 ............................. CGTGCCGGCCTATTCCAAACTATTTTAGGCGT 70629 29 100.0 32 ............................. CAGTCTATCGTAGAAGCACAGATCCCGCAGGG 70568 29 100.0 32 ............................. GCTTCATCTGGCTGTGTCTCGATACCGGCGTT 70507 29 100.0 32 ............................. CAGGCGCTGGGCTTCGAGCCGCATATCGCGAT 70446 29 100.0 32 ............................. GCTATTCGCCCCTTCGGCAACCGCGAAGTCTG 70385 29 100.0 32 ............................. AATACGCCGAGATCGAAGAAATCCGCAGCCGC 70324 29 100.0 33 ............................. TTTGGCCATCGCGACGTTGCTGTATTCGATAAC 70262 29 100.0 32 ............................. ATTTAACCCGGAAGTAAGGCGGGTCGGTTGCA 70201 29 100.0 32 ............................. TAATGCGGGATGATTATCGACGTCATCGCCTC 70140 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 70079 29 100.0 32 ............................. AGGTGTTCGGGCCGACAGACAACTGGCAGCGC 70018 29 100.0 32 ............................. CGTGAACAGCGCCAAATATATCGGCATGAACC 69957 29 100.0 33 ............................. AGCTATTCAAAAAGTCGCGTGAGCTTGTCATTC 69895 29 100.0 32 ............................. GGGTTGCATGCACTCATGCGGATAACCCTCTC 69834 29 100.0 32 ............................. CGTACGCTTCAAACTTCGTGATGATGGCGGTT 69773 29 100.0 32 ............................. CTGGCTACGCCGGTGCGGTTGCCGCCGGTTCA 69712 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 69651 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTTAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCAAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : TTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75772-74095 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNQH01000022.1 Serratia marcescens strain 13F-69 CONTIG_23_length_136302_cov_36.789649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75771 29 100.0 32 ............................. ATTACCGCGTTGATTATCCGTGGTGGGAACGG 75710 29 100.0 32 ............................. AGTCAGAACAATGGCTGATGAGTGACATCTAT 75649 29 100.0 32 ............................. CATGTCGGCAACAATGTAGAAATCACCATTCC 75588 29 96.6 32 ............................T GATATTATCCATGTCGGTGGGAATGACCGTTT 75527 29 100.0 32 ............................. AACTTGATTGTCCCGTCGCAGCGCTGTCTCAG 75466 29 100.0 32 ............................. GTCACGTTCTACGCTGAGTTTCCAAAGAAGAT 75405 29 100.0 32 ............................. TTTGGTTATCAGCAGGTAATACCGGGACTGTG 75344 29 100.0 32 ............................. CGGTCCAGATGTGGAAAGATACAGACTCAGGG 75283 29 100.0 32 ............................. GTTACACGATGCGGCATATGATCCACGCGGCA 75222 29 100.0 32 ............................. ACGCCTTCCGCGCGATGCTCGCTCCGGGCATC 75161 29 100.0 32 ............................. CCAATCGCGCTGGATGACACCGCGCTGACAGC 75100 29 100.0 32 ............................. ACTTTGCGCCAAACACCAGGGAAATACGGGAA 75039 29 100.0 32 ............................. CACTTCATCCAGTTTTTGGCGCGGCAGATTGG 74978 29 100.0 32 ............................. CCAGTCGCGCAGCACCGGATAATGTTCGTGTA 74917 29 100.0 32 ............................. CGGATATAGCGGAATTGGTTGAACGTATGGGC 74856 29 100.0 32 ............................. GAACATACCGCCCGGAGCTAACAGCGATTTAA 74795 29 100.0 32 ............................. TAGGCGTTTGTTTCTCGTTCAGCCATATAAGC 74734 29 100.0 32 ............................. TCATGACACCACAACAGCAAGCGCAGCAATGT 74673 29 100.0 32 ............................. CATCGTGGATCTGGGGTATTCGGTGGCCTATG 74612 29 100.0 32 ............................. GAATTCGTCGGATCTGAGATTACGCTGACGCT 74551 29 100.0 32 ............................. TGGATGAAGACCAGAAAACCCGACCAAGAACA 74490 29 100.0 32 ............................. TTGGCCCAAATGCTTGAGTGACAGCGGCCCAG 74429 29 100.0 32 ............................. ATTGCACAAAACACCCAGCTCGCCGCGATCGC 74368 29 100.0 32 ............................. CATGCGCTTTCCGTCATTTTGGAACATGTGAA 74307 29 93.1 32 ...........A.T............... GCGCGCGCATTCTTCTTTGGTCAGGTTCGGCA 74246 29 100.0 32 ............................. ATGGCGGGACTGTTTCCTGGGTATTTGATGCT 74185 29 96.6 32 ............C................ TTTTACACCGCAGTTTGTTTGAAATACGACAG 74124 29 82.8 0 ............C............CGAT | C [74099] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCGGAACCTGTTTCGTTAGGTGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGTTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTACGAGGCCGGTTGGCCGTGTGGTTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAGCCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCCATTGAAAATCAGTAAGTTATCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATTAGTTAATCTTAGA # Right flank : TTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCGCCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGTTGTTGCTCCTGTGAGCGAATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 85948-85370 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNQH01000022.1 Serratia marcescens strain 13F-69 CONTIG_23_length_136302_cov_36.789649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85947 29 100.0 32 ............................. AATGCGGGTGATTTGTCGCGCATTGGTGCGAA 85886 29 100.0 32 ............................. CTGTCAGCCAAATTCCATTAATGTTATCTACT 85825 29 100.0 32 ............................. GAAGGTAGCCAGCTAAGCTTTGGGTTTTTCGT 85764 29 100.0 32 ............................. ACAGCAGCAGAACGTAAAGCAGCCCAGCGAGC 85703 29 100.0 32 ............................. ATCCAGAAGAACTGATCCAGCGCCGCAACATC 85642 29 100.0 32 ............................. CATCGACGCAGCCGGACGTCCATCCGAAAAAC 85581 29 100.0 32 ............................. ATGGACGAGATCGGCAACAACCCGATGGTGAT 85520 29 100.0 32 ............................. CAAGCCTGGCAGGTGACGTTTACGATGCGAGA 85459 29 100.0 32 ............................. GTCTGACAGCCCCCGAGGAATACGGGGTGCAC 85398 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : GCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGTGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGACGGGCGTAGGGGGGGAGTATCTTGTTGTTATAGCGTGAAAATTCGGTGATTCTGCTTTATTGCTATAGATGGTTTTTTTATTTATTAGATTTCAAAGAGTTATGTGACTGCCCCGATGCTTAAATCGCGGTGAAATCTCGTAGATGTTGAAATCCATTTAATTCAATTAGATATATTTATA # Right flank : GGCGCGACAACGAAGCCTACCGCGGTATTAGCGTGTTCCTTACGCAAGTGTGGGGAAGTAAACGCATCAAGAGATATAATAATTCAAATGAAATAATACCATGCTAATTATATTAAGTGGTATAAGGGGTTTTTGTCTTATTTAAGAAGCTATATGAAATTTAAATTAATATCATTGCGCTTTGATTTTACTGTTGTGAGCTTAATTGGCTTTTTGTGTTTTCGAATAAAATATAAGTACCTTTAGCCTGATGGAAGTGCTAAAGATAACAAGGCATTATTTATATCTAAACGGGATTGTTTATGGGAAGTGACATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTTTTCATGCCGCCGATATTCTGGCAGAGATAGGTTTCTCTCGTGCCGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //