Array 1 253223-252418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERE010000002.1 Salmonella sp. 32020201-2017-00050-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 253222 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 253161 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 253100 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 253039 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 252978 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 252916 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 252813 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 252752 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 252691 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 252630 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 252569 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 252508 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 252447 29 96.6 0 A............................ | A [252420] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271764-269355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERE010000002.1 Salmonella sp. 32020201-2017-00050-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271763 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 271702 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 271641 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 271580 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 271519 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 271458 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 271397 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 271336 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 271275 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 271214 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 271153 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 271092 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 271031 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 270970 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 270909 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 270848 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 270787 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270726 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270665 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 270604 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 270543 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 270482 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 270421 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 270360 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 270298 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 270237 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 270176 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 270115 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 270054 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 269993 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 269932 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 269870 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 269809 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 269748 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 269687 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 269626 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 269565 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 269504 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 269443 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 269382 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //