Array 1 237154-239011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPO01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_1514 NODE_2_length_420795_cov_5.69999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237154 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 237215 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 237276 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 237337 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 237398 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 237459 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 237520 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 237581 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 237642 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 237703 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 237764 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 237825 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 237886 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 237947 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 238008 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 238069 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 238130 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 238191 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 238252 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 238313 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 238374 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 238435 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 238496 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 238557 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 238618 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 238679 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 238740 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 238801 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 238862 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 238923 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 238984 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255693-257432 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPO01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_1514 NODE_2_length_420795_cov_5.69999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 255693 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 255754 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 255815 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 255876 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 255937 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 255998 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 256059 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 256120 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 256181 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 256242 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 256303 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 256364 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 256425 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 256486 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 256547 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 256608 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 256669 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 256730 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 256792 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 256854 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 256915 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 256976 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 257037 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 257098 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 257159 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 257220 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 257281 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 257342 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 257403 29 100.0 0 ............................. | A [257430] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //