Array 1 1182663-1183058 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYQ01000001.1 Rhodovulum sulfidophilum strain AB26 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1182663 30 100.0 31 .............................. CGCCTCGCTTTCCGGCGGCACTGAACGGTTG 1182724 30 96.7 31 .............................G ACCGGCAAGGTAGCCAGCAGCCGCGATGTCG 1182785 30 100.0 31 .............................. CGGGAGACGGGACCGATGGAGACATCTGGAA 1182846 30 100.0 31 .............................. GGCAGCGCAGGATCGACGCGTGGGCCGGGCG 1182907 30 100.0 31 .............................. ATGGTCGCGGCCAGCAGGCTGTTCTGATCCT 1182968 30 96.7 31 .............................A GCGACTGCGCGCAGGCCGACGAGGCGACGGT 1183029 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.6 31 GGTTCCCCCGCACCCGCGGGGATAGACCCC # Left flank : CCGCCAGACAAGTGTCCGAGCGTCCTTCCGAAAACATCGAACGCGTGACCCGTCGCATGACCGGTACTGCGCTCAGACGGGATGGTATCATCCCGGACATGATCGAAAGGATTAAGGCGTTGATCGAAGGGCGCGGGTCCTGATGCCGCTGACCATGATCGTCACCCGTGACGTCGAGATGCGCTACCGCGGGTTCCTGACGTCGGTAATGCTGGAAATCGCTCCCGGTGTTTATGTCTCGCCGGACATGTCGGCGGGTGTCCGGCAGAGGGTCTGGTCCGTAATGAAGGACTGGTGGTCGCAGCTGCGGCGCGGTTCTCTCGTTCTGGTATGGCGGGATCCGGCCTCGGTCGGCAATTTGCGCATAGAGACCCTCGGCGAACCGCCCAAGACAATCGTGGATGCCGACGGCTTATTGCTCGTAAAACGAAAGTGAATGACGGTCCACTCATCCGTATGCTCTTTGACATTGCTGGTATTTCAACATATTGAGCCCAAGA # Right flank : CAGTGGGTGCGCCGCTCGATCTTGAAATGGCCGAGGCGGGCGGGATCGGCGCCGATAAGCTCGAAAATGCGTTGCTCGGGGTCAGCCAGCGCGTTCAAGGTGCAACGCTCGCCAAGCGCCCTTACGACGCGCCACTGACCCGGGCGCGTATCCTGGAATTCATCGAAGATGATTCAGGGCCAGGTGATGGCAGTGAGCGCTCGGAGTTTGGCGGACCCCTCGGCGGGGTATTCTTCCGAGCCGAGATGGGTTCTCCGGGGCGTCACCGAGCCCGCGCAAGGGACCCAGAGGCCGCCGTAGTCCGAGAAAACCACCGGCCTGGTCGACACCGGCGTCAGATTTCCATCGGCATCCTGCGCCAATTCGCTGACATGCATCGCGCCGGGCCGCGATTCGAGATGGGTGACCGAAAAGATCTTGTCGCCGATATGCAGCAGCGAGATGGAATCGGCGTCGACCGAGACATGGTCCGAACCGTCTTCGGATTTCACCACTTTTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATAGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 3571642-3573525 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYQ01000001.1 Rhodovulum sulfidophilum strain AB26 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3571642 36 91.7 30 TG.............T.................... CGAGGTGGACGGCGATCACCGCCGCACCCG 3571708 36 100.0 30 .................................... CGCGGCCTCGTAGCTGATGGTGGTGACCTC 3571774 36 100.0 29 .................................... CCTATAACGAGCATCAGGTTTACCGGCTC 3571839 36 100.0 30 .................................... GAGGAGCAATCCGAAATCCCGGCACCTCGC 3571905 36 100.0 30 .................................... TGTTTCAGTGCAGCCATGATTTTCTCCTCA 3571971 36 100.0 30 .................................... TGTAAGGTCTCTGACCTGTTCTGCAAGCTT 3572037 36 100.0 30 .................................... CTGATCCGTCTCCTGCCGCAGGGCTATCCC 3572103 36 100.0 30 .................................... GGTCCGCGAGGTCCTTCTTCTCGCTTTCCA 3572169 36 100.0 30 .................................... CCAGTCATGCGCCTTGTTATCCTTGCCCTT 3572235 36 100.0 30 .................................... GCCATGCAGGACGATTTCCCCGCCCCTCCC 3572301 36 100.0 31 .................................... GCGGATCGCGACCACCTGCACCGCCAGCGCG 3572368 36 100.0 30 .................................... TGAATGCAACGATGGTCATCATCCCCACGG 3572434 36 100.0 30 .................................... GCGCTTGCACCAGACGCACAGGCGCGTCTC 3572500 36 100.0 30 .................................... GGATGTGGGAACGGGTGCATAGCCGCGTGC 3572566 36 100.0 30 .................................... CGCATCGACCACGGCCCAATGGGTGCCGGT 3572632 36 100.0 30 .................................... GCGTCGAATGACCATACGCTCGCAAGCCCT 3572698 36 100.0 30 .................................... TCAGCCGCGGGTCTTCGGACAGGTTGTGCT 3572764 36 100.0 30 .................................... GCCCGGCGGAGAGGGTCGGGCCATGGCATG 3572830 36 100.0 30 .................................... CGGCATGAGCGGACGAGCGCCCGTGCCGTA 3572896 36 100.0 30 .................................... CGGGCGGGATGAAGTGCGCGTTCAGTCCAC 3572962 36 100.0 30 .................................... CCCACCTGCGAATGGCCCGCCCGCATGGCG 3573028 36 100.0 30 .................................... GACCCGGACCTCGGTCGGTCATTACACAAT 3573094 36 100.0 30 .................................... TTCCAGATCCGGCTAACCGAGTGCTGTTTC 3573160 36 100.0 30 .................................... TGGAGCATCAGATCATTCGCGACACAAGCA 3573226 36 100.0 30 .................................... GGCATGTATGTCGCCCGTGACGCTTGCGAA 3573292 36 100.0 30 .................................... AGACACGTAAGCACGGCGCTGTTCGTCGAT 3573358 36 100.0 30 .................................... GGAGGAGATGCGGAACCCGTTCTCCCCGAT 3573424 36 100.0 30 .................................... CTGGACGCTGCTGCCCTCGCGCGCGCAGGC 3573490 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.7 30 GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Left flank : GCTGGGCCGATTCCGATGGCGATTGCCTCGATACCCGCGCCGAGCTGCTGGCGGATCTCTCCACCGTGCCGGTCACGCTGGCGCCCTCGGGCTGTTCGGTGCGCCACGGTCGCTGGATCGCGCCCTATACCGGGCAGGTTGTGGCCGAGGCCGGAGATCTCGACATCGATCACATCGTGCCGCTGCGCTATGCGTGGGATCACGGTGCGACCAGCTGGTCGGCCGAGAAACGCGCTCGCTTCGCCCGCGATCCCGTCAACCTGCTGCCCGTCAGCGCCTCGGCGAACCGCTCGAAAGGCGCGCGCGGGCCGCTCGACTGGCTGCCGCCCGATCAGGGCTTCCGCTGCCAGTACGTGCTGCGGTTCCGGCGGATCTCCAAGGCCTACGGGCTGGCGTTCACGGCTGCTGAAGAGCGGGATCTGGTGGCGCTGACCGGGCGGGTGTGCGGCGTATAAGCGCGAGTGCCTTTGTGCCAAAGGCGCTAATCAGCCATTCACAAC # Right flank : TGGTTCCCTCCCCAAGACACCGAAATTACGGCGTTTTTGGGAGTGGGGGAGTGTGAAAATCTGGGGAACCATCATCAAAACAGCACCAGTTGTTCCGGATTTTTCCGGGCAGATCTGCGACCTTGATCCGAGAAGTGTACGATATCACGGTATTGCCGGTCCGTGAAGCTGAGTATCTGAATGTCACCCTTGTTGGGCAGATGCCGCTCGATTCGGTTCACCCGCGTCTCGAACGCGTCCTTGCCGTTCACGAACCGCGCATAGACCGAGAACTGGCTGCGTTCGAATCCTTCGTCCAGCAGGAAATTCCGAAAATCCGTTGCCGCCCTGCGCTGCGGCTTGGTGTCCGTGGGCAGGTCAAACATCACGAGTATCCACATTATCCGATATCCAGACAGAAAGGTGGGCGCGGTGGTCATGCCCCCAGCCCCGCGAGGGTAAGCGCATCGGGTGGCATAGGCAGGGCGAGGTTCAGTGTTCCGGCTTCGAAACTCTGGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //