Array 1 1418-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPF010000026.1 Bifidobacterium breve strain MSK.23.105 NNKMKJFK_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1417 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 1350 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 1283 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 1214 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 1147 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 1080 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 1014 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 947 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 879 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 811 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 744 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 675 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 606 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 540 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 474 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 407 33 100.0 34 ................................. CAAGGGTCCGCACTTCCATGGTTCTACTCCCAAG 340 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 274 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 208 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 142 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 74 33 78.8 0 ....................T..CTG..C..TA | T [53] ========== ====== ====== ====== ================================= ==================================== ================== 21 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : AGAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 110-2094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPF010000017.1 Bifidobacterium breve strain MSK.23.105 NNKMKJFK_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 110 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 177 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 246 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 315 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 384 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 451 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 518 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 586 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 653 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 720 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 787 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 856 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 923 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 991 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 1057 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 1126 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 1193 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 1259 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 1326 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT G [1346] 1395 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 1460 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 1527 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 1594 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 1660 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 1728 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 1795 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1863 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1929 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1995 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 2062 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCGGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //