Array 1 29262-26041 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTZ01000008.1 Microbispora cellulosiformans strain Gxj-6 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 29261 29 96.6 32 ............................G TTGTGCGCGCCCATGCCCCGATCGAACGGGCG 29200 29 100.0 32 ............................. CTTGACCGCCAGGCGCTGCTCAAGCTCGCCCG 29139 29 96.6 32 ............................G CGGCGGCCGGTCGACGGGCCCCCGGTGCGGTG 29078 29 100.0 32 ............................. CGCAGCACCGCCAACCCCGACGTGCGGGTCGA 29017 29 100.0 32 ............................. CGGCGCCCGGGGACGGGCCGGGCGCCGGTGTG 28956 29 100.0 32 ............................. TGGTTCCGGTTCGGGCCGAACATCTGCCGGCA 28895 29 96.6 32 ............................A GGAGAGCGCTGACCGCGATCGCCGGGTTGAGC 28834 29 100.0 32 ............................. TCGAGTATCGGGAGCGGATGCACCAGCGCGAC 28773 29 100.0 32 ............................. CGACGAGCATGGCCCCTACCTCCCCGGTCGGC 28712 29 96.6 32 ............................T CCTTGGACTGGATGAAGCTCGTCACGGCGCCC 28651 29 96.6 32 ............................T CACTCGCCGGGCTTCCGGGGGGTCGCCATCCC 28590 29 96.6 32 ............................T GGTTGTCTTTCGGGAATGGGTGCGTGACCGGG 28529 29 100.0 32 ............................. TCCGGCGGGACGTCGGGGAACGCGTTCGACTC 28468 29 96.6 32 ............................G CGGGAGTCCGGCGCTTCTTCCCACGCTCCGCC 28407 29 96.6 32 ............................G GTCCTGGAGGAGCTGGGCTTTCCGGTGCTAAC 28346 29 96.6 32 ............................G GGCATGCTCGACGGCCGGCGCGGCGCCCCCAC 28285 29 100.0 32 ............................. TCTCCAACGACGGCCCCGAGGCCAGAGGTAGC 28224 29 100.0 32 ............................. GACACGGTCTCCACGAAGCGCGGCGCCATGAT 28163 29 100.0 32 ............................. GGCGCACCCGTGTTCGGGCCGCTCAGTGGATA 28102 29 96.6 32 ............................G AGCATGAAGGAGCGCGGCCTATCGAGCCCGGA 28041 29 100.0 32 ............................. TTCGAGGGCGGCACCAACTCCACGACGATCTC 27980 29 100.0 32 ............................. TCGGGGTAGGTGTGGCGCGGATGGTGTTCGAG 27919 29 100.0 32 ............................. AGAACAAGTGCCAGCCCGTCCGGTCACGCCAC 27858 29 100.0 32 ............................. GCCAGCAGGACCGTCAGTTCGGTGTTCTTCAC 27797 29 96.6 32 ............................T GGACCCGTACCCGACCCGCTGTACCCGGTCGC 27736 29 96.6 32 ............................G CGTGTTGCCGACGCCCAGCGGGCCGAGCTGGA 27675 29 96.6 32 ............................G TAGTTACGGGGGTCGGGCGCGTCCTGGTCGGC 27614 29 100.0 32 ............................. CGGGTCAAGGCAAAGGCCGGGTGGTCCACCCG 27553 29 96.6 32 ...........A................. CTTCAGCCCGACGCATTGGCGCAGAACGAGAT 27492 29 96.6 32 ............................G GGGCCGTTCTACGGGGTAGATGTTCCAGAATG 27431 29 100.0 32 ............................. TCGGCACCGAGGCTGTAGGCGTCCAGAGGCAG 27370 29 96.6 32 ............................G CTGCCGCCGGTCAGGGCCGTCTGCAGCGCCAG 27309 29 100.0 51 ............................. CTGTCCGGGCCGTACGTGTCCGGCGGCGGGGGTGCACGCTCACGCCGCAGC 27229 29 100.0 32 ............................. TCGCCGAAATCGCCAAGAAGCACATGGAGAAG 27168 29 100.0 32 ............................. GTCTTCAGGCGGCTGCCCGCCGGGCGGATGTT 27107 29 96.6 32 ............................G TAGTCGTTCTGCGCGTTTTCGGAGTAGTAGCC 27046 29 96.6 32 ............................T GTGTTCGAGCCGCTCATGGACCCGTCGCTGAC 26985 29 96.6 32 ............................G ACGAGGCCCGCGCCCTGTACGAGCGGCTCAGC 26924 29 100.0 32 ............................. GCCCAGTCGGTCTCCGTGAACATGTGCGCCTG 26863 29 100.0 32 ............................. CCTACGAGCCGCCCGCCTGGCAGCCGGGCCCG 26802 29 100.0 32 ............................. AGCTCCGGAGAGTCACCGCAGTACCAGACGAC 26741 29 96.6 32 .................A........... TCATCAAGTAGGGCGCGGATCATGGAACAGTC 26680 29 100.0 32 ............................. TCGGGTGCGTCCTCAACGTCATGTCCCAACCG 26619 29 96.6 32 ...............A............. TTGAGCCACCGCACGAGCGAGCTGATCGTCTT 26558 29 100.0 32 ............................. GGGATGTAAGCCTCGCCAGCCGTCTCGGGCTC 26497 29 100.0 32 ............................. CTCTGCTGCCCGCCGTGACCGGGCTCGTGCAG 26436 29 96.6 33 ............................G TCGACGTCGAACACGGCCGGGTCGACGGCCTGA 26374 29 96.6 32 ............................T GTGGACGCGGGCGACGCTAACGTTTCCTGGAC 26313 29 100.0 32 ............................. CTGTCATCGTGGTGTTCAACCCGAAGTCCGTG 26252 29 82.8 32 ..........T........C....G..GT GTGATCACACCCGGGTCGACCGCCCTGTACGC 26191 29 79.3 32 .CA......T....T........A....A CTGCGGCGGGTACGGACGTGACTGTCGCTGTC 26130 29 82.8 32 ..............GA......C.G...G CTGGGCATTGGCGCGGTGAGGTGCGGCGCCCT 26069 29 79.3 0 ...C.....A.......A.A.G..A.... | ========== ====== ====== ====== ============================= =================================================== ================== 53 29 97.1 32 GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Left flank : GACCCGTGGACGCCCAGGTCAGCCCGGCCTCCCGGACAGCCCGCGCTCCCGCCTCGTCCATCTGTTGAAAGGCGGGGGTCGCCTTCCCGCAGTCATGAACGCCGCAGATCCAGGCGAAGAACCGGCGCCCATACCCAGGAGCTCCCGCCACGTCCTCCAGCCACGCCTTCGTCGACGGAGCGAGGTAGTGATCCCAGATTTGCTCGGCGACCGCAGCCGTGTCGAGAAGATGACAGATCAGTAGATTCATACGCCCCGCTGCCTTCGCAGCTGACTTTCCCCACAAAACGCCTAATTGACCCGTGACGTCCGGGTCCGCGAACTCAAGCTCGTACTCGCCCACCATCGCCTCCTTCATCACCGGCTGGTCAGAACATTAGAAGTCGCCACCGACAAGAGCAGGCGATCGTCAGATAGGGTCCCCGGTGAGGTACGAACGGCGTTGAATCGAAGTGAATGAGAAACGACGTTCACAACCGGAAACCTCCAGGTCAGCAAGA # Right flank : ACCTATGCCCGCCGAGAGCTGCACGCGATCAAGACCGCCTGCCCAGCGGTATGCTCCTACCCTCAGCCGGAGCCCACCGCTGATCTAACTAAATTCGCCTGCGAGACCGGCGTTCTTGACGAGGCGGCCCCATCGAGGGCTGCGGGCAAAGGCCCTCGCGATGGCGACACCGCTTGGGAGGTCGCCGTCGGCATGGCGGTGCTGCTGCGCCCATAGCCAGGCCTCTGCAGCGCCCGGCTGTTCCCGTCGTGCCCATCGGGCAAGTCGGCGTCTTCCTCCTGATCATCTTGCGGCCCCGCGGGGTCAGCTTCCGCGTCGGCGGCGGGATCAGGGGTGAGAGCGGGAAGATCTTTGACCTTAGCCTGCCCCTCCTCGAAGCGGCGGATTTGGGACATTAGGAGCTCGTAACTGCCGATCAAGGCTAGCGATGGCCAGGCGGCGATGATGCGGCCGATCACAGTGGACTCGGCGATGGCAACGTTCGCGCCTAGGCTGGCGAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38816-42256 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTZ01000008.1 Microbispora cellulosiformans strain Gxj-6 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38816 29 100.0 32 ............................. GATCCACCTGACACGCGCACTGTTCATCCGAG 38877 29 96.6 32 ............................T CACGTACAGGAGGGGGACACCGACGGTGCCCG 38938 29 100.0 32 ............................. CCGATCGACCCGGACGCCGAGTTGCCGGACGT 38999 29 100.0 32 ............................. GATCCACCTGACACGCGCACTGTTCATCCGAG 39060 29 96.6 32 ............................G CGGAAGACCGCCGACCGGTGCCCGACCCCGCC 39121 29 100.0 32 ............................. TCGGGCCGTTCGACGTGGCCGCGTACGGCTAC 39182 29 96.6 32 ............................G AGACTCCACTGCCAGCACTGTCCATAAGGGCC 39243 29 100.0 32 ............................. CGTCCCCCTCAGTTCGCCGTTTTCCGCCCTCA 39304 29 96.6 32 ............................G ACCGACTTCGCCGATGCCCTTGTCGCCGTGGG 39365 29 96.6 32 ............................T CTGTCCTGCTCATCGATGCTGACCCGGAACAG 39426 29 100.0 32 ............................. ATGCCGTAGGCGATGCCGCCGTCGCCCACGGA 39487 29 100.0 32 ............................. ACCATCGGGGTGGACATCGACGACGACGGGAT 39548 29 96.6 32 ............................A GCTCGCCGGGGGCCTGCCCTTCGACGTGGAGG 39609 29 96.6 33 ............................T CGGCACATCAGACACAACGGTCGGTGGCGCCAA 39671 29 96.6 32 ............................G CGCTTGGCTGGCGTGCTCAGCCCGGAGTGGCG 39732 29 96.6 32 ............................G CGCTTGGCTGGCGTGCTCAGCCCGGAGTGGCG 39793 29 96.6 32 ............................A CGTACCGGCCGTTGACCATCGCGGAGCTGTAC 39854 29 100.0 32 ............................. GTCAAGGCCCGGCAGATGCGGCACGGCCGGCG 39915 29 96.6 32 ............................G TGGTCCGGTGACGGGCTCGCCGACGGTACGCC 39976 29 100.0 32 ............................. AGCCCCACCAGGACCACGGGCAGGGTCAGCGT 40037 29 100.0 32 ............................. TACATCAAGGGCCGGTACGGCGACCCCGAGGG 40098 29 96.6 32 ............................G CGTGCCCTGGCCAGGGAAGGCGCGGCGATCAC 40159 29 100.0 32 ............................. GCCCGCAGTGGCGGCCTGGCCGGATTCGAAAC 40220 29 100.0 32 ............................. CTCACCCGTGACGATCATCGTTGGTAGGTACG 40281 29 100.0 32 ............................. CCCGGGCTGAGGTGGTAGCCCAGCATGCTCGC 40342 28 86.2 28 .....................-.C...AA GAGCACTCCGATGTGCAGGTCTGCAACG 40398 29 100.0 32 ............................. GTCACGACCACCGCGACCGCCCCCGTCACCAA 40459 29 96.6 32 ............................T GCGGGCATAGCCGCGTAGGTGTCCCCGGGGTC 40520 29 100.0 32 ............................. TGCGAGAGATCGCGGCAACGGTGGATGTTGCG 40581 29 96.6 32 ............................G CCGCCGTGAGCCCGCGGATATTCCTGCTCATG 40642 29 96.6 32 ............................G GGAACCACCGTGTTCCCCGATCTGAGCCGCCC 40703 29 96.6 32 ............................G TGGCTCGCGGCCACCGGCAAGGACATCGTGAC 40764 29 100.0 32 ............................. TGGGTCAGTCGCGTCAGCTCGGCGTGGTCGTC 40825 29 96.6 32 ............................T CGGGATTGTTACCCGATTCCCTGAGACTCCCT 40886 29 96.6 32 ........................G.... CAACGCGATGAGGCCCTGCACCGGCACCGGCA 40947 29 96.6 32 ........................G.... TTCAAGGCCGTGTTCGGTGGTGGCACGGTGAC 41008 29 96.6 32 ........................G.... TGCTCGCCGTAGATTCCGCCCAACTTGGAGGC 41069 29 89.7 32 .....G........T.........G.... TGGAGCGGCTCCGCGAGGTGCTCGCGTCCGCC 41130 29 93.1 32 ........................G...G CGCAAGCACGCGCGGACGCCGCCGATCGGCGC 41191 29 96.6 32 ........................G.... CGCCTGCCCATCTTCGGCGGGTCGCTACTCGT 41252 29 93.1 32 ........................G...A CGGGACTTTCTCCTCGTTCTACCGGTCCAGCC 41313 29 96.6 32 ........................G.... CTGAGGAAGGGGATGGACGCGACGTACCCGAC 41374 29 93.1 32 ........................G...T ACACGGCGTCGCCTGGTCACTGAGCTGCCCCC 41435 29 93.1 31 ........................G...A GCACATGTCACACGACTCTGACGTGATCACC 41495 29 89.7 32 .....TT.................G.... GCCGGTCAGCTCCCGATACCGCGCGAGGACGT 41556 29 89.7 32 ...............A........G...T ACTTCTGAGCGATCTTGGACAGGTTGTCACCG 41617 29 96.6 32 ........................G.... GTCTCGTGACCGGAGGGCTTGGCGTCTACGGA 41678 28 89.7 33 ....................-...G...G ACCAGGGTCGGCCAGGTCATCAAGGTGAAGACC 41739 29 93.1 32 .....................G..G.... CCGCCGAAGGTGCCGACGTACGGGATCTCGAC 41800 29 96.6 32 ........................G.... AGCCACGGGTTGCGCTCGATCATCGGCGTGAG 41861 29 93.1 32 ........................G...T CCGATTCCCCCCGAGCTGCGCGCCGCGGTGGA 41922 29 96.6 32 ........................G.... CCGGTCCTCCTGGCCACGGTCGCGAGCTGCTT G [41943] 41984 29 93.1 32 ........................G...G CACAGTCCCGGACTTGCCGTCATCTTCCCCTG 42045 29 93.1 32 ...............A........G.... TACGGCGGCGCGGACCTCACGAGCCAGGCATT 42106 29 100.0 32 ............................. CTCGTCTACCAGCTGACCCCCAAGTCGGCCGA 42167 29 89.7 32 .........T......A...........T TACGAGCGCGAGATCCGCGAGGCCTGGGCGAA 42228 29 89.7 0 .......T....T...........G.... | ========== ====== ====== ====== ============================= ================================= ================== 57 29 96.2 32 GTCGCCCCCGCGCCCGCGGGGATGCTCCC # Left flank : GAGGACGTGAACCAGCTCTGGGACGAAAAACACGGCGCCGTATCGGGCGGCATCAACTGGGCCGATGAATCCGACCTGGCCATCAACCTCGGCCTGAACCTCGTCCAGCCGACCATGGGCGAGGATCACATCGCCGTCGTCGGCCCCGAATTCGACAGCCCCGGCTCCGCATCATGACCGTCGTCGTCCTCATCGCCGCTCCCGAAGGGCTACGCGGTCACCTGACCCGCTGGATGGTCGAAGTCAACGCCGGAGTCTTCGTCGGCAACCCCAGCCGCCGAATCCGCGACCGTCTGTGGGATCTGCTCGCCGCCCGGATCGGAGACGGCCAAGCCATCCTCGTCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGCACCGCAGGCAAAGACCGCTGGCACCCCACCGACTTCGACGGCCTCATCCTCTCGGCCCGCCGCCGAGCCCAACCGAATGAAAACCGCCCCCACACCCGATAAACCAGCAGCTCAGCAAGT # Right flank : CTTTGGGCCGAGATTCAAGGCTGCTTATTGAAGACGCCCCCGCCTGCTGCGGTGACCCGATTACCAAAGTCAGGCGTGACTATAGTGAGCTGCTCGTAATCAATGAGCTACTGCTAGCCAGCGCGGCTACGAGCTTGCTCAGGAGTGCCTCTGGCAGCCGTCCGAGTCCCAGCCCGCTGATGTCGAGTGCGTGCCCGAGAGCGACGGCGTCATTCTCTCTCAGCGACGTCGCGAATCCGGAACGTCCGAGAAGTTCCCGGGCGGCGTAGCCGTCCTGGGACGCCATCACCCGCGTGATCAGTGTGGTGGCCACCGCGCGTCCCTCTGGGCATCCCATGCCGCCGACGGCGTCGATTACGCACAAGCCCAGCCGGGTCCGGAACACCACCAGACCGGGTGCAGTGTGGTCGAGCCTCCGGTAGCGGTCCAGCATCACGGTGAGAGCCTCGCCTTCCGGGCCTCCGGGTCGGCAGAGTGCGGCCAGGCACGTGGTTACGGCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //