Array 1 7128-7554 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYND01000010.1 Photobacterium phosphoreum strain AK-3 CFSAN065475_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7128 28 96.4 32 ...........T................ ACGCTCTTTTTATATTTAAGCGCGTAAATCTT 7188 28 96.4 32 ....G....................... TCGCGGTTACAGCCGCTATATTCATTAATATT 7248 28 100.0 32 ............................ CGCGCTAATGGTGTTTCTACTTACATCATTAA 7308 28 100.0 32 ............................ ATGCGTGACGATTAATTTTGTAAATTGTTCTT 7368 28 96.4 32 ....................T....... ATGATAGCGGCTGTCGCTGTTAGTGTTTTTAA 7428 28 96.4 33 ............G............... TGCCGTCTAGGTAGTTGAGACTATGCCTAGGGG 7489 28 82.1 10 .A......T..A....A.T......... AGGCTTGGAA Deletion [7527] 7527 27 67.9 0 .A..G...-.CA...AA.......C..G | G [7549] ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.0 29 GTGAACAGCCGCATAGGCAGCTAAGAAA # Left flank : TACTTATATGAAAAAAGAAGGATTTTTCGATATATCTCAAATAACTGAAGTGCCTTGTGATGTTAATGAACTTCGATTCGTTAGAAATTCAGCGATAGATAAAAGCTTTTTGAAATCAAAAAATAAGCGATTGAAACGTAGTGAAAGAAGGGCAAGAGAAGCAAATCGAGAATACAATCCAGTAGCAAGAGAAGATCGCATTTTTGACCACTTTCATAGTATCCCTATGTCCAGTAAAGGCACTGAACGTGACTTTGTGTTACAGATACAGAAAAAAACGTGTGATATCTCTCGAATGGATCATCAATTTAATAGTTATGGGTTTGCAACTAATGATAAATGGCTTGGTTCTGTACCTGACTTACGAGATACCCTTTTATTTTGATTGATAATAAATTTACTATTAATCAATCTGTTACGAGGGATTGTTTTTAAATGGTATTTTTGTGTTATTTGATATAGTCCTTTGATTATTTAAGATATATCGACTATTTTTAACA # Right flank : GCAGATAATAGTGATAATGAGCCATTCAATTAATGTTGAGTGGCTCTTTTTTTTGTGTTTGTTGTGACTAGTTTTTGGACAGAAATTGGTTTGGTTCTTTACTCTACTTAGCTCGTAGATATTAGGAAAAGTATGGGTACCGCAGTCTTAAGCAGTGAGTAACAATTGGCTAAAATGTGAAGCGGAACCGAGCCAACTTTTACAAATCCGACTTTAAGGCCTTATGATACGGGCTGATATCACGAAAGATTCAAGTCGATACAGCATTTTTTATACTTTTTACCACTACCACAACTGCATGGGTCATTACGTCCCAGTTTACCTGCTTTTCGAATTCTAGATTTTTTTAAATTACTTGCGATCTCGTTTAACCTATCCAATTCCAAGCTTGGGATTTCATCTATTGAGATATCACTCCATTCTACCTTTTCGAGTGTTAATTCATCAGAATAAAATAATTCGATTATCAATCTAGTGGTATCATTCACAGCGAGCATGGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACAGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1050-1257 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYND01000027.1 Photobacterium phosphoreum strain AK-3 CFSAN065475_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1050 28 100.0 32 ............................ AACATAAATCGACCTTTTAAATGGGGTGAGTT 1110 28 100.0 32 ............................ TTTGTCACTGTCGATAAACAGTAATTCTTTTT 1170 28 100.0 32 ............................ GAAAGGTTCTATTGTTGCAGTTGATACCAACG 1230 28 92.9 0 ....................T..A.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTGTGCCGTGATGTACGCGGCTTGATAG # Left flank : AACTTACACTGATGCGTCATGGAAAATACCTCGTGACTCCTTGCTTCGTGATACCATTTTATTGGATAAATATGATCTTATTGAAAATTCAAAGGGCGAGATGGAACTTTGGATTGATGACCCCCATTGGCGAAATGGCTTAACTGATGATCGCCGATCTGTTAAATCAGTTGAGTCACTTTGTCTTCCTCATACAGTAGAGCGTTTTCCGTCGAAGAAATTTGATTTACAGAAGAATATGCTTAGCATTATAGATAATGTTCTTTCCGATGAATTTCAACCTGAGAATGTCATTGTAGCATTGGAGGCTGTTCGGTCCTTGGCACTCATGACTGGATTAATTTGTATTGATGAATGAGATTGAATTTATACCCTTATTTTTTAGCATTTGTAACCCCTTGATTTATTGAAGATAAAAAGCAAAGGTTTTAAAAAGGGGTAAAGTTGATATTTTCAGGTAACATATTGAAAAAATGAAGAATATTAGAAGAAACCTTCAG # Right flank : GTTTAAATCTGAATATCGCGGGTAAGGGGAAACGACTACCTTCGTGAATTAAATGCGTCGACAGTAATAAACAATAAAAAAGCTAACATCTGCTGTTAGCTTTTTAAATTCATCTCATTCAAAGTCTACTTAAAAATCGGCATCAACCTCAAACACCATAGGTTCGCCAGTGACAGGGTGGTTTAGGCCAAGGTATTGTGCATGTAGATGTAAGCGGTTTGCTTTTTGACCGTATAAGTCATCACCGACAATCGGCATATTCATACCGTTTTGGTGGGCTGAGTGAATACGTAGTTGGTGAGTTCGGCCAGTTTTCGGGTAATAATAAACCTTGGTTTTACCATTCTTACGTTCGAGAACCTGCCATTTTGTAAGTGCAGGTTTGCCGTATTCGTAACAGACTAACTGGCGTGGGCGATCGTCTAAATCAACCCGCATCGGTAAGTTAATCTCACCGTGATCCTGCTCTGCAATACCATCTAGTAATGCCACATAACGCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 272251-272516 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYND01000004.1 Photobacterium phosphoreum strain AK-3 CFSAN065475_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 272251 25 100.0 35 ......................... TACGGTGTGTTCATGCCCGATACATGGCGACAGAT 272311 25 100.0 35 ......................... CACGTTTTAGATTCGGTTGCCACAAAAGTACGTGA 272371 25 100.0 35 ......................... CACATATTTCAACTCTTGCTGATTTGCTTCCTGCT 272431 25 100.0 36 ......................... CACTTTAGTAAATAGTATATCGCGTTCTTTAATTAA 272492 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ==================================== ================== 5 25 100.0 36 CTATCAAGCCGCGTACATCACGGCA # Left flank : GTATTTGGTCCATCAGGTATTGTTGCCTTGCCATTAATGACATCAAGCTCAGGTATTTTTGCGGGTATGGCAATATTTACCATTGGTTTGCTAATTTCATATCTTGTTGGATTTGCAATGACATGGTTCTTTGGTACCAAAAATGTTGATTTAAGCTAAGACTCATCAGAGAAACGCTGATTTGATAAGCAATCTCTAATCATTGGACATTTCGGTTTAGCGGCGAGTCAGGCCTGATTTCGATATTTAATCGGAGTCAGGCTTTTTACTTGTTCTTACTGTATTTTAGGCTGTGTTTACACTTTAACATAGGACATCCATAATCTTCCCTTTAGAAAACAGATAAGAATTAGCGCTATTGTCAGGGTTGGTTATTGTTATGTCACTATCGTGAATGCTCTCGTGAGAGCGATAGGGGATCTATTCACATCGCGTCGAAAGATATGGCTGTCCAATGCCCCGGCACACTAGTCGATATTCAACTAGTGGTTTTACATGGG # Right flank : ACACTGAACGTATTTTATTAAATTCACTATATTTTCAATACCTTATCCTAAATATGTCATTTTACCCATTATTTTTTGCATCATGCTTTCAATATTTAAAATCAATGACTTATAAACACCTTAAATAAAAGGGTCTAAGATAACAGGTAGGGCAATAGCATCTTGTGCTCTCGACATGCCGTAATTATTGGGAGTGTTCGTCTTATGCTCATCATGCTTTTTATAGTCAATATAAAGGAAGAAGCCTCGATCTTGAGTTGAGCTGGTTGCACGAATATGAATAACATTTTTGTCGTTATCTTTCTTTGCAATATTTTCCAACATGTCTTTACGTCGCTTAAATACATCCTCAGCACTTTTTAAGCTTTTATTCTTTCCTTCCATTGCACGCTTAATAAGTTTCGCTTCTGTTTTGGCAACATATGCCGGCGTGTTTCTTTCATGCGATCGGTTGCGGTGAAAAGAGTAGTACCCATGTTCGGTTGATATGGGAGCAGGGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCAAGCCGCGTACATCACGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //