Array 1 108816-108143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAF01000038.1 Escherichia coli P0302293.9 gecP03022939.contig.38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 108815 29 100.0 31 ............................. GACAAAATTCTCAAAACTCGATCAGGAAAAT 108754 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108693 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108632 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108571 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108510 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108449 29 100.0 30 ............................. ACCCAATAGTGAAATACAGCATCATTTTTT 108388 29 100.0 34 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAAGT 108325 29 100.0 11 ............................. AAACCGGAGGC Deletion [108286] 108293 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108232 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 108171 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 12 29 100.0 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125810-124317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAF01000038.1 Escherichia coli P0302293.9 gecP03022939.contig.38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125809 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125748 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125687 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125626 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125565 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125504 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125443 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 125382 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 125321 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 125260 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 125199 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 125138 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 125077 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 125016 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 124955 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124894 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124833 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124772 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124711 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124650 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124589 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124528 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 124467 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 124406 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 124345 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //