Array 1 39974-40603 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWK01000007.1 Acetobacter aceti strain NBRC 3281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39974 36 100.0 30 .................................... TTCAGAAGGTCGCGTGCCGACCTGCCCAGC 40040 36 100.0 30 .................................... CGGCCGAGCTGGTCGAACGCGGCCAGCCCG 40106 36 100.0 30 .................................... GAGGGAGCGGTCTCATGGCTGAACCGATCC 40172 36 100.0 30 .................................... TGGAGCGGTTCGGCGTGGCGGCCGACATAG 40238 36 100.0 30 .................................... CCGCCGTTGCACCTGTAGTCATCACCAGGC 40304 36 100.0 30 .................................... AGTATGCCTCTGCTCCCCTCCGGACGAGAA 40370 36 100.0 30 .................................... GGAAGGGGGGAGACAGGGACTGCGAACCCT 40436 36 100.0 30 .................................... TCCCATCAGATGTATCAGCAAAGAACTCAC 40502 36 100.0 30 .................................... CTCACTGGTCAGGGACCAAGCGCCCTCACT 40568 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : AGTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATTGCTGCATTCTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : TGCCTTCTTGGTAACCAGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGTAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACCGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGTGTTTGATGTTATTCCGATATCGATATTATGTTCGTGGTTTCAGAGAGGGCAGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 96853-97795 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWK01000001.1 Acetobacter aceti strain NBRC 3281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96853 29 100.0 32 ............................. GCATCCACCAAATCGGCCATGTGGTATGTTGC 96914 29 100.0 32 ............................. AGGGTTGATGCTGGACAGGACATAGCGACCAT 96975 29 100.0 32 ............................. AACAGCGGTCCATGTTTGAGTGCCGGTATCCA 97036 29 100.0 32 ............................. GCTGAAACCTTCATTTCACTCTCCCACCTTTC 97097 29 96.6 32 ............................C GCGTCTGCCCATGTGGAAATGAGAGGACGCAG 97158 29 100.0 32 ............................. TTCTGGGTCGTGGCTATCATTTCCACGGCGGC 97219 29 100.0 32 ............................. AGCAATGGCTTTTGACGTGGTGTATTGGCGGT 97280 29 100.0 32 ............................. TCAGGATTTCGATATGGGGGGGGCGGAAGGAA 97341 29 100.0 32 ............................. GATGAAGCTATGAAAAAGAACGCTGACAAGGC 97402 29 100.0 32 ............................. ACCAGACCGGCGTATAATTGGTGGTTGTCTGC 97463 29 100.0 32 ............................. CCCACAGCACCGGGAACGACCGGCTCACAGGA 97524 29 100.0 32 ............................. CGATCCGACGCTCGAAAATGAAAAACAGAAGC 97585 29 100.0 32 ............................. TTTTTCTCGTCGTCACCGTTAGGCGTTGACAA 97646 29 100.0 32 ............................. TGATGCGCCACCTGTGACGCTCCCTGACACCT 97707 29 100.0 32 ............................. GCGCGCTGCAGACAACCGAGCATGCCGAGGCC 97768 28 89.7 0 ..............T........-..T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : GTCGGACGGGACTGCTTGGCCGCATCATCCCCGCTATTGAGGAAGTGCTCTCCGCCGGAGACATTCCTCGTCCTGAGCCACCGCCCGAGGCTGTCCCTCCTGCTTTTGACGAGGCGCAGTCCGGCGACGCGGGCCACCGGGGATGATGGTCGTCGTCGTCACGAACGCGCCACCACGCCTGCGCGGCAGACTCGCCGCATGGCTGGTCGAAGTGCGGGCCGGTGTCTATGTCGGCGATTATTCGGCCCGTACGCGTGAAATGATCTGGCGACAGGTGACAGAGGGTCTGGAAGCCGGCGATGCGGTCATGGTGTGGAAAGCGCCCACGGATCAGGGCTATGACTTTCTCACCTTCGGTCGCAACCGCCGGATGCCCGTTGATTTTGACGGTCTGAAGCTTGTAAGTTTCCACCCGGAAAAACCCGCCTGAAAACCTGTTTTCAGTTGGTAGGATCTTTGATAACGTAAAAACCGTTTTAGATCAGTAGCTTCCACGAAGA # Right flank : GAGATTTGCTTAGCTGGTGCTTCTTCCAGCAAGAGGAAGTCGTTTTCAGATAAACCCGTAATGAAGATACGCGCTATAAGCAGTCAGTTACGGACCGCTGAACGGTATATCTTTCAGGGATTCATGTCATGGCGACAGGCTGGGCTCCGGAAGGAGCAGTGCAGGAACAGATCGACAACACCATCGCCGATGCAGTCAAACAGGCCCGCTCCGGCATTCCGTCCGGAGAGAGCGCTCTTGAATGTTGTGAGTGCGGAGAACCGATCCCCGAAGCCAGACGCAAGGCGCTGGCGGGAGTGAAGTTCTGCATCGACTGCCAGTCAGAACGGGACAGCCAGCGTGTATTCAGCAGCATCAACCGTCGTGGCAGCAAGGACAGTCAGTTGCGGTAGCGGAAGCCGTCTGTCCGGAAGAAAGCATCCTTCATCCAATAGCTGCCGATGCGCGCACCCAACACCCCGGCAGTTCGATATTCTGTCTTGTGGTCCGATTAACGGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3834-5143 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEWK01000078.1 Acetobacter aceti strain NBRC 3281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3834 29 100.0 32 ............................. GATTGGGACAGCACGAACTCAAACGGCTGGCG 3895 29 100.0 32 ............................. GCCGTAATGAATTACAGCGCCCATCCACTTCC 3956 29 100.0 32 ............................. GCCGCGAGCCAGCCCGCGATGCGGGCAGTCTC 4017 29 100.0 32 ............................. ATTATCGCCGCCCATGATGCCGCCGTTAAGGA 4078 29 100.0 32 ............................. TGATTTTGGCCTATTTTATCGCCCAGGCCATA 4139 29 100.0 32 ............................. GATTGGGACAGCACGAACTCAAACGGCTGGCG 4200 29 100.0 32 ............................. ATGTTGAGCGGATCGGCCCTTATATTGATGGG 4261 29 100.0 32 ............................. CGCAATGAATTGCGGCTGGTGAGGTAATATGA 4322 29 100.0 32 ............................. AACGATGGACCTCCACACTATCCTGTTGATAG 4383 29 100.0 32 ............................. CGATGGCGGAGCTACCGCCGCCTGTGTATCGC 4444 29 100.0 32 ............................. ATAGGCGACGATGGTACATTCTTTATAAACCA 4505 29 100.0 32 ............................. ATCGAGGCGCCCTCTGAGGAAGGAGATCAGAA 4566 29 100.0 32 ............................. TTGGTTCGCATCCGCCGTTGTCGTGTCTGTTG 4627 29 100.0 32 ............................. GTGTGTCCATCAACACAGCCTATTCGAACCAG 4688 29 100.0 32 ............................. CGGCTGGAGTGGTTGGAAAACGTTTCGGTGAA 4749 29 100.0 32 ............................. AGATCGACGCATATGAGAGGCGGTGGCCATCC 4810 29 100.0 32 ............................. TCGCTGTTCGGCGTGATGCCGGTCGTGGTCGT 4871 29 100.0 32 ............................. CAGCAGGACGGGCCGCCTCTCACCGCCCATAA 4932 29 100.0 32 ............................. AATGCGGCGGGTAATCTGAAGGCCAGCGGCAA 4993 29 100.0 32 ............................. ATACGAATCTAGCGACAGCTATTTCTTCCGGG 5054 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGCGACGAGCGC 5115 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.7 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : ACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAAATGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CCATTTACGTTAAGGGCGGAAATGTCGCTCTACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTAACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCGGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGTCCGAGATCGATGTCAGCGCACCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGAGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //