Array 1 45500-48770 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZJJ01000014.1 Alkalicoccus saliphilus strain 6AG scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45500 36 100.0 30 .................................... CTGTAATGCTATTCATTTGTTATTGCCTCC 45566 36 100.0 30 .................................... AAGACAACCGGGACGAAATTCTTTCCGCTC 45632 36 100.0 30 .................................... TCGGATCCCACGTTATCCTCACCTTGTGCT 45698 36 100.0 30 .................................... GAGAAGGCGGAGGGATTATTCGAGATATCA 45764 36 100.0 30 .................................... AAGAGCAATATGATACGGCATCAAAATGAA 45830 36 100.0 30 .................................... CTGCTACCATCGCGGAGCTGATGACACTCA 45896 36 100.0 30 .................................... GATCAGCTAACTTAATTAATGTAGCTTTGT 45962 36 100.0 29 .................................... TTATTGCTGGAATCTTACTAACATTGTTT 46027 36 100.0 30 .................................... AATGCGGTGCTTGATTTCACCGGCTTTATC 46093 36 100.0 30 .................................... GCAACAGTGAGAGGCTTCAGCAGTCGATAG 46159 36 100.0 30 .................................... GGATGACCTGCAGGCGAGGGTGCGGCAGGG 46225 36 100.0 30 .................................... TGTAGATGGTTATCCTATTATGGTTCCCGT 46291 36 100.0 29 .................................... TTTCTTTCGTGCTGTCGAACAAGGAGTCC 46356 36 100.0 30 .................................... TAAAATCCCGAAGCATCAACGCAATACGCA 46422 36 100.0 30 .................................... TCTCCCTCTTTTTTTGTAAAAAAATCTTAG 46488 36 100.0 29 .................................... TTCTCTGCGATTGAAGCGCGGGTGATCGC 46553 36 100.0 30 .................................... GGAAAAGAAGTAGAAATCACTATTCGACTA 46619 36 100.0 30 .................................... CTGCTGGTCATCCGGTAGAAGAGCGATGCA 46685 36 100.0 30 .................................... AGAAGAATAGGAGGCTACATCATGCCGACA 46751 36 100.0 30 .................................... ATCAGACAGCCTTTCAGGACAAGGGTACAC 46817 36 100.0 30 .................................... AGCGCCGGCACTTCGTGGATCTTTCGGCTT 46883 36 100.0 30 .................................... ATGGTCTTTCCGGTGTCTTTCATCTTCCCG 46949 36 100.0 30 .................................... CTTCCTGCTTCCAGTGGTCGGCGTCCGGTT 47015 36 100.0 30 .................................... GTCATTGTCCTTTCACAGCTGTCCAGAGGC 47081 36 100.0 30 .................................... AAAGTGTTGACCAGGGTGGATTGTTCGTCT 47147 36 100.0 30 .................................... GATACCAAGCGCATATTTAGGCACATCGCC 47213 36 100.0 30 .................................... ATGGTCAGTGGCATGTACCGAGCGGTTGAA 47279 36 100.0 30 .................................... AACTTTAAAACGATTGCACATGAAGCCGGA 47345 36 100.0 30 .................................... AATCCTTCCGCGCTCGTCAGGAAATGGATA 47411 36 100.0 31 .................................... TGGAAACATCACCAGCACCTTGACAGGGACA 47478 36 100.0 30 .................................... ACAAGTAAGAAGTTTCGACAATAACGAGGG 47544 36 100.0 30 .................................... TTGACAATCGCGTTGATCATGTCCGGGATA 47610 36 100.0 29 .................................... AGAATTGCACGCTCTCAGCGACAACCTCC 47675 36 100.0 30 .................................... GTTAGAAGAAATAGCAAAGGATGTTCAGAG 47741 36 100.0 30 .................................... TCTGCGGAATATACTGCAGAAGACCACGTG 47807 36 100.0 30 .................................... CTGGGGAAGTATCACACCCTCACGTACACT 47873 36 100.0 30 .................................... CAATCAGCAATATGGCGAGCGACATGTTAA 47939 36 100.0 30 .................................... AAAAGTTTGAAGTTGTGCGAGGATTGGAAC 48005 36 100.0 30 .................................... AAAATATACATGGAAGAAGCCGCCGAACTA 48071 36 100.0 30 .................................... ACAACAAGAGAGTAAGGATTTTAATTAAAT 48137 36 100.0 30 .................................... GTGGCAGACGGTGACGGCAACGAGAAGGTA 48203 36 100.0 30 .................................... GTGGTCATGTTCAACAAGCAGGCTGAAAAC 48269 36 100.0 30 .................................... GAACGGCTGGAAGAACTGCAGAAGAGAGCT 48335 36 100.0 30 .................................... CCCGGAAACAGACGGGAGCGGCTTTGAACA 48401 36 100.0 29 .................................... CGCAAGGCAAGGAAAGCAGCAAGTCCAAG 48466 36 100.0 30 .................................... CAAGCTCCATCAAAGAGTTTGCCGATCACC 48532 36 100.0 30 .................................... TTAAAAGAGTGGCAGGCAAACCAAGTAAAG 48598 36 100.0 31 .................................... TTAGAGGGTAACTTCCCAATGCACAACGTTT 48665 36 88.9 29 .............A.G......AT............ AATCACAGATGAGAGTTAGGACACGTTGC 48730 36 91.7 0 ...........T...........T...G........ | CAG,T,A [48750,48763,48766] ========== ====== ====== ====== ==================================== =============================== ================== 50 36 99.6 30 GTTTTAGTACCCTGTAGTTTTAGGTAGATATGAGAT # Left flank : TTCCAGTAAAGCAGCTCCTTATATAATTTATTTCTATCCAGAGCATCTTCTCAGCCCTAAAGAGCAGGAAGAAATGAAAAAAATGCTTAAAAGTTTCTCTAATCAAATAACAATTATTGTATTGTCTAAGTCAAAGTATTTTCTGGCAGAGAATTTATTTGAAAATAATATGTTTATTTGGAAAAAGCAGCAGTTTGATGAGGAGCTTATCGAGGATATGGTGTGGAACGCTCCGCTCGATTACTCTAAAGAGGAAATATACGAGGCTTTCTCGAATATAATACAATACTATGCTGAAAATCTTGAAACCACCCCGGTGGTTTCAAATTATAAAATTGCTGACATTGCTGTTTTCAAAGAAATAGAACTATATGTTTTGATCTATTTTATGAACAAGCAGCATTTTGATTTTCAGCTTGATCTACAATGGGAGGTGATGAGTGAAGCGATGAAACAGTTCACAAAAACTTATGCTGAAATATGAAAAAATTTCAGCAGCT # Right flank : TATGAACTGGAAAAGGATTCCTCCTCAAAAAGCAGATGTTTCTGCGTAATAAAACATCCCGAAACAAGCCTTCACGTATTTTAGCCGAAGTAGGAATGGGGTGACTCCGGGGCGATAGAGGACGAGCCGAAGATCCACTCCGACCGACGGGGCGGAGGGTGGAATTAGCTGAGGCCGTCCCGCCCGGAAAGCGTCCCCATGGAAACGGAGGCTGACCTTTACAGAAAATCGGCCTGTCACCCCCGGCTCGATAACCTGAAATTTAGAAGTTTTAGCTGAAAGCTCATAAATTCATTGCAGGCTGTGACTTTCCTCACAGCCTGTTTAGTATCTTCTCTGATATTCTTTATTTATTAGAGAAAAAGGAGAGATGAACATGCTGCACATTCAGCTTTATTCGATAAATGAGCAGAATATAGAAGAGGCTTTTGCAGAAGCAGGCTTTACTAAAGCGAGAGAAGGATGGTTTCTCGATAAGAAGCTCAGCAAAAAGCGCGAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACCCTGTAGTTTTAGGTAGATATGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //