Array 1 107992-106393 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXU01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Z300 NODE_3_length_170886_cov_112.094339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107991 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107930 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107869 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107808 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107747 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107685 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107624 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107563 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107502 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107441 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107380 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107319 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107258 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107197 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107136 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107074 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106971 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106910 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106849 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106788 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106727 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106666 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106605 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106544 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106483 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106422 29 96.6 0 A............................ | A [106395] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126044-124124 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXU01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain Z300 NODE_3_length_170886_cov_112.094339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126043 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125982 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125921 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125860 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125799 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125738 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125677 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125616 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125555 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125494 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125433 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125372 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125311 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125250 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125189 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125128 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125067 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125006 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124945 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124884 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124823 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124762 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124701 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124640 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124579 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124517 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124456 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124395 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124334 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124273 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124212 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124151 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //