Array 1 37337-36442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELD010000003.1 Streptococcus dysgalactiae subsp. equisimilis strain V 123 NODE_3_length_108156_cov_36.8349_ID_1223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37336 36 100.0 30 .................................... TGCTTAGTAAATTTTCTTTTGTAACACCGT 37270 36 100.0 30 .................................... AATTAATTCAAGCGGAATTGTTAAAGAAAG 37204 36 100.0 30 .................................... TTTAAAATGAATTGTTTTATTGATTCGTAA 37138 36 100.0 30 .................................... TGATATTCGTGGAAAAGTTGGTAGTACTGT 37072 36 100.0 30 .................................... ATAATCTTTTGTCTTGATTTGTAATGAATG 37006 36 100.0 31 .................................... CAAAAATGGAATTTTAACAAAGGTTTTAATA 36939 36 100.0 30 .................................... TCTAGCTGGATACTATGCGTGGTTAATTGA 36873 36 100.0 30 .................................... AGCATTATTCGACTGAAATTGTACTTCACT 36807 36 100.0 30 .................................... TACAAGATTTGATGTTGGGGCAAGTCAATC 36741 36 100.0 30 .................................... TGTATTAAAATCAGCTCTATCATCAAACCA 36675 36 100.0 30 .................................... TCCATCTGAGATTAATAAAACTGGTCGTTA 36609 36 100.0 30 .................................... TATTATGGATAGTTCAGTACCTCTTAGGGC 36543 36 100.0 30 .................................... GACAAAGCGAATTGCTGAGTTGACGGGAAA 36477 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 18438-17077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELD010000008.1 Streptococcus dysgalactiae subsp. equisimilis strain V 123 NODE_8_length_76957_cov_50.7579_ID_1141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18437 32 100.0 35 ................................ TCCTTATGCAATTGTATACGCAGATATTAAAATCA 18370 32 100.0 37 ................................ TTTAAATGTTTTTAATCACAGAACAACAATCGATACA 18301 32 100.0 34 ................................ TATTTTTGTTTTTCGCATTACATTTCCTAGCCAT 18235 32 100.0 33 ................................ ATACAGCTGCTTATATACCAAATAATTAAGATT 18170 32 100.0 36 ................................ TTCAATAATTAACTCGTCCCATTGAGCACGTAAGTC 18102 32 100.0 33 ................................ TCGTATCGCTTTACTATCGTTACACGCTTTACA 18037 32 100.0 34 ................................ TTCCACCTCTGCCAACACATAAACTCTCTCTCTG 17971 32 100.0 33 ................................ TACCTCAGTATAGGTGTCAGCTTAGACGAATTT 17906 32 100.0 33 ................................ AAAAGTGCAACGAACCAATAAAGAAGTAGCTGA 17841 32 100.0 34 ................................ CTATTGCATTTAATGCAAACTCCATATTTTTATC 17775 32 100.0 34 ................................ TTTTTGCATCAGTAAATCAAAATGCAGGAGAGTG 17709 32 100.0 34 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATAC 17643 32 100.0 34 ................................ ATCTCAATCCTCCAAGTTCTCTTCTCGGCAAATC 17577 32 100.0 34 ................................ TTTTCTTACGATAACCTTAAAATTATCATTTTCG 17511 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 17445 32 96.9 35 ....................A........... ACAAGATATTGATGATAATAGACCAAAGGTTCAAA 17378 32 100.0 37 ................................ CTAAGTCCCTCTAGCAAATTGCGGACTTTTTCGGAAC 17309 32 100.0 35 ................................ ACTGTATCGTATAACACATTCAAGAAAATTCGCAA 17242 32 100.0 35 ................................ AGGGTATGCGACAAGCACGAGTTATCCTCTTATAT 17175 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 17108 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.4 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACAGGTTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //