Array 1 22196-23009 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971089.1 Akkermansia sp. KLE1798 Scaffold246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 22196 31 100.0 35 ............................... CCAGCTTATCAAGGGGGCGCGGAAGGTGATGAACA 22262 31 100.0 37 ............................... CCGTTCACGGTGACGGTTTTTTTCTTGGGGAAAATCA 22330 31 100.0 33 ............................... ACTACATGCAGGTTTATTTTGTCCTGAATGGCA 22394 31 100.0 33 ............................... TCTGTACTTTCGTTACTCATAATCTTTGCATGG 22458 31 100.0 34 ............................... GGGCCTCAATCAATTCCCGTATCTGAGCATGCGT 22523 31 100.0 34 ............................... ATCCGTCCCTTGACGATGATGACGGGCCGGAAGA 22588 31 100.0 34 ............................... TCCCTCGCCGCCGCCGGGCGCCGCCGGCGCGCCG 22653 31 100.0 34 ............................... TGTCCGGGAAATGGTGAAAAACACCCCGCGCGAA 22718 31 100.0 35 ............................... AGGAGAGCATTGTTGATAAGTTGCTGCAACTGCTC 22784 31 100.0 34 ............................... AACCAGGCGGTGGAAAAAGAATTGATCATCTCCA 22849 31 100.0 35 ............................... ATCTTAATGAGTTCCATCTTTTTATTGCTTTCTAA 22915 31 100.0 33 ............................... CCGCCTGGTCCACGATTACTACGGACGAAGCTG 22979 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 13 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ATTGAAACCCAGGACTTGAACGCCACCGTCAAGGCCGCCAACGGTCGCACCCTCACGGGTGCGTGGATTGAAACGGTATGGACCTGACGAATGGGGACATCACTACGGTCGCACCCTCACGGGTGCGTGGATTGAAACCTATGCTTCCTACATCAACGGACAGACTGTCTGGGTCGCACCCTCACGGGTGCGTGGATTGAAACTATGGTTTAGGCCCCTTTCCCCAGCCACCGGGAGTCGCACCCTCACGGGTGCGTGGATTGAAACGTTTCCAGTTACATCCCCTACGTTCCCTCCGGAGTGTCGCACCCTCACGGGTGCGTGGATTGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACAAAAGCGTTGTCAGTGTCGATGGAATGGCTAATGT # Right flank : CCCCGCCAGAGACCGGAGCGCTCCCCATCAATGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACCTTCGGCGATCATTCTTCCGACTCCGATGCAGCGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGGTGGGGGCCTTGCCGGGCCTGGAAGAGGCCGTCGCACCCTCACGGGTGCGTGGATTGAAACGTGCGTACTCTCCACGACGATCCTCCCGCTTGTCGTCGCACCCTCACGGGTGCGTGGATTGAAACGCGTTTTACGAGGCCCCACAGATACAGTCTCCTGTCGCACCCTCACGGGTGCGTGGATTGAAACGACGGCTGGACCATGGGAAGAAATGGAAAACTCGTCGCACCCTCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 23237-23654 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971089.1 Akkermansia sp. KLE1798 Scaffold246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 23237 31 100.0 33 ............................... CCGGTGGGGGCCTTGCCGGGCCTGGAAGAGGCC 23301 31 100.0 34 ............................... GTGCGTACTCTCCACGACGATCCTCCCGCTTGTC 23366 31 100.0 33 ............................... GCGTTTTACGAGGCCCCACAGATACAGTCTCCT 23430 31 100.0 33 ............................... GACGGCTGGACCATGGGAAGAAATGGAAAACTC 23494 31 100.0 33 ............................... CGCTATACCGGAAATTGAAGCAGACCTTAAGGA 23558 31 96.8 35 ......T........................ GTGGCTCAAATACTCCTTCAGCGCGGTCTTTTCCG 23624 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 99.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GTGGATTGAAACAGGAGAGCATTGTTGATAAGTTGCTGCAACTGCTCGTCGCACCCTCACGGGTGCGTGGATTGAAACAACCAGGCGGTGGAAAAAGAATTGATCATCTCCAGTCGCACCCTCACGGGTGCGTGGATTGAAACATCTTAATGAGTTCCATCTTTTTATTGCTTTCTAAGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGCCTGGTCCACGATTACTACGGACGAAGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAACCCCGCCAGAGACCGGAGCGCTCCCCATCAATGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACCTTCGGCGATCATTCTTCCGACTCCGATGCAGC # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACCACCGCGTCCACATGGGCCCAGCGGGTAGCCTGTCGTCGCACCCTCACGGGTGCGTGGTCATACGGATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGTAGAATGAATAAGCAACAGTTATGCTTCAACATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCCAAGGCCGGTCAGGCTTCCATGTTATCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTATCAGGTTTCCTGCGTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTATGAAGACAAGGGGTTATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29224-28853 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971100.1 Akkermansia sp. KLE1798 Scaffold417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 29223 33 100.0 36 ................................. CATGATGCACGGGTCCAGGTCCGGGAGCTTCATGCA 29154 33 100.0 35 ................................. ATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAG 29086 33 100.0 34 ................................. TGAAGAAACTTGCCTGCATTATGAGGAAGAATAT 29019 33 100.0 34 ................................. CACGTGGAACATTTATTCAGATATGCCGGAAAAT 28952 33 100.0 34 ................................. CGGCAAATCTTTGAGAGGTATCTGCTCGTCATGG 28885 33 97.0 0 ..T.............................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 99.5 35 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : AACTGTTCTTGGCAATGAGCGGATGGCCCAACGGGCAGTCGCACCTCACACGAGGTGCGTGGATTGAAACATCGCCCATGAAGACGGCGCGCTTGAAATTGGCGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGCCTCTGCTTCATCACGGTCCACGTCCTCAACTCGTCGCACCTCACACGAGGTGCGTGGATTGAACCCCCCCATTTTTGAGCGGCCTGATGGGCTGTCAACGTCGCACCTCACACGAGGTGCGTGGATTGAAACTATTTGTGATTCACTCATTGGCGGCTTCTTGCAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCTCACACGAGGTGCGTGGATTGAAACCATTTGCCCTGTTGAATGTAAATATCGCCGTCCGA # Right flank : GTCATGACTGCCGTGTACCAGGATGCGGCGGGACGTCGCACCTCACACGAGGTGCGACTAAACCATTCGGGGAGGCGTTGGAATATCCATCAGAGCGGAGAGCAGAAAGAAGAAAACCGTATTTCCCTGACGTGATTATGTTCGCGATGGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGCCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCGCCGCTTCCATGAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTTCGCATCCGCGCTTCCACCCACGGGATATTTTCCCTTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATTCGGGCGGCCCACGCATTTTTGCGCTCCACAACCCGTACCCTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30356-29453 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971100.1 Akkermansia sp. KLE1798 Scaffold417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 30355 33 100.0 33 ................................. AATCAGGAGAACTAAAAAATCTAAAAAACGGTT 30289 33 100.0 34 ................................. CGGCGGCCCTGGCCAGGCGCACCCGTGGGTGGCC 30222 33 100.0 34 ................................. GGGGTTCACATGATGGTCGGAGTCTGGATACTCT 30155 33 100.0 34 ................................. TTCCAACATGAGGGAACGCATGTTGGCGACGAAT 30088 33 100.0 34 ................................. CGCCCCTGTCGTCAACGGGTCCGGCGTCATGGTC 30021 33 100.0 34 ................................. GGTGGTCTCTGCGGTCTGCAGTAAAGTAGCGGAA 29954 33 100.0 34 ................................. ATGTTTGGTTCAGGCGGTTTTGCGGTCGGTGACG 29887 33 100.0 34 ................................. CCTATGTTGTCGGAAGCGACGGACATCATTGCCC 29820 33 100.0 34 ................................. CTCTAAATTTATCTGTACTATCGTAAGACATGAG 29753 33 100.0 34 ................................. TGTTCTTGGCAATGAGCGGATGGCCCAACGGGCA 29686 33 100.0 33 ................................. ATCGCCCATGAAGACGGCGCGCTTGAAATTGGC 29620 33 100.0 35 ................................. CGCCTCTGCTTCATCACGGTCCACGTCCTCAACTC 29552 33 97.0 34 ...............................C. CCCCCATTTTTGAGCGGCCTGATGGGCTGTCAAC 29485 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 14 33 99.8 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : AGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCCGTCGCACCTCACACGAGGTGCGTGGATTGAAACTTTTGATTTTATGATAAGCGGGAGTTTTTTCTGGTAGTCGCACCTCACACGAGGTGCGTGGATTGAAACACGATTCCCCGCGGGGATGTTGGTCCTCAGGGAGTCGCACCTCACACGAGGTGCGTGGATTGAAACTCTTGCCGTCGCCAGGGCAGCTATGGACCCGGACGGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TATTTGTGATTCACTCATTGGCGGCTTCTTGCAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCTCACACGAGGTGCGTGGATTGAAACCATTTGCCCTGTTGAATGTAAATATCGCCGTCCGAGTCGCACCTCACACGAGGTGCGTGGATTGAAACCATGATGCACGGGTCCAGGTCCGGGAGCTTCATGCAGTCGCACCTCACACGAGGTGCGTGGATTGAAACATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAGGTCGCACCTCACACGAGGTGCGTGGATTGAAACTGAAGAAACTTGCCTGCATTATGAGGAAGAATATGTCGCACCTCACACGAGGTGCGTGGATTGAAACCACGTGGAACATTTATTCAGATATGCCGGAAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 30689-30521 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971100.1 Akkermansia sp. KLE1798 Scaffold417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 30688 33 100.0 36 ................................. TTTTGATTTTATGATAAGCGGGAGTTTTTTCTGGTA 30619 33 100.0 33 ................................. ACGATTCCCCGCGGGGATGTTGGTCCTCAGGGA 30553 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 100.0 35 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAATACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCCCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATTCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTTACCGGAAAGGAAACTGGACGCGCTTAAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAGGAAGGAACATGCCCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : TCTTGCCGTCGCCAGGGCAGCTATGGACCCGGACGGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCTCACACGAGGTGCGTGGATTGAAACAATCAGGAGAACTAAAAAATCTAAAAAACGGTTGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGGCGGCCCTGGCCAGGCGCACCCGTGGGTGGCCGTCGCACCTCACACGAGGTGCGTGGATTGAAACGGGGTTCACATGATGGTCGGAGTCTGGATACTCTGTCGCACCTCACACGAGGTGCGTGGATTGAAACTTCCAACATGAGGGAACGCATGTTGGCGACGAATGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGCCCCTGTCGTCAACGGGTCCGGCGTCATGGTCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 86721-87076 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971094.1 Akkermansia sp. KLE1798 Scaffold332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 86721 31 96.8 34 N.............................. TTTTGCCGCTGATGGGGTGCGTGATGGCCGGCGT 86786 31 100.0 34 ............................... CTTGAAGCTTCCGGAACAATTCAGTCACATGGCC 86851 31 100.0 34 ............................... TACGACCAGTACGCTTCAGGCATTGACATTGATA 86916 31 100.0 34 ............................... ATGTCTAGTGGGCGGCTTGGATGATGGTTTGAAT 86981 31 100.0 34 ............................... CGCTGACGGCTCCGGCCGCCGCGGTCGTCCGCGC 87046 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 6 31 99.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAATTAAATATTGTAAATATACAAGGCCGTTCCGTTCATGGCGGAACGGCCTTCTGTTTTCCGGAACTTGTAATGAAAAGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAGTGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCTCCGGAAGTTCGGTGATTGATGTAAGTCATTGGAAAACGAAGTTTGACATATCCGATTACAAAATTTAAGGCGTGCGGAATATCGTGATGGAGGGAGGTTGGCGCAAAAAGTCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCCCACGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCAGACGCCGCCCTCAAGCACGAAGGCGTCGAAAAGTCGCACCCTCACGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCGCTGCAAAAAGCAGAGGAAATCGCTACGTCGCACCCTCACGGGTGCGTGGATTGAAACAGCCAGCTTAAAGACGTTGCGAATGACGCGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAACTTTGTGAGCACCGACGATCTGTCTGCTTACATGGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGTCCCTGGCCGGGGCGCGCTGGATTATCCTTGTCGCACCCTCACGGGTGCGTGGATTGAAACATCCGCAAAGCCTTCAAGCGTGGCGGAAGAAGAGTCGCACCCTCACGGGTGCGTGGATTGAAACTGACGACCAGAATCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 87725-88016 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971094.1 Akkermansia sp. KLE1798 Scaffold332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 87725 31 96.8 35 N.............................. CACCACTTCCGGGCATCGTCCGGCCCCGGTCGGCA 87791 31 100.0 33 ............................... CTTCTGCAATTTTGCCCTCCGGGCTTCCAATTC 87855 31 100.0 34 ............................... CAACATGGCCAGATGTCCAGGATGTCCTCGTCCT 87920 31 96.8 34 ..............................T TCAAAAAAGGCTTCCAGGATCAAAAAGCTGGACA 87985 31 71.0 0 .C....T...........TA.T...AT..CA | A [88001] ========== ====== ====== ====== =============================== =================================== ================== 5 31 92.9 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNGACACCGCTGCAAAAAGCAGAGGAAATCGCTACGTCGCACCCTCACGGGTGCGTGGATTGAAACAGCCAGCTTAAAGACGTTGCGAATGACGCGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAACTTTGTGAGCACCGACGATCTGTCTGCTTACATGGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGTCCCTGGCCGGGGCGCGCTGGATTATCCTTGTCGCACCCTCACGGGTGCGTGGATTGAAACATCCGCAAAGCCTTCAAGCGTGGCGGAAGAAGAGTCGCACCCTCACGGGTGCGTGGATTGAAACTGACGACCAGAATCGTCATTGAAAGCAACCCCAGTCGCACCCTCACGGGTGCGTGGATTGAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGACAGAAAGAATCTGAAATGCTATTAAAACAATGAGTCCCCTCAATAAAATTTTCTAAAAACGGAGGTATTTAATAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTGCCATATTATAGTATGAAGAAATAAATATAACCCCCATTTTATCTACAAGGGCCAGTTTACAGGGAAAGGTTAAGTCCAAATTATAGGTGAAATTTAAAGGCCGGCCTATTTTCAATGAAAATAGGCCGGGCAGGAGAGATTAAAATCCGTCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTGCCATCATTGTTGACAATGAGGCTTCTATGGACTTTTGCAGAAGAATATTGACCTGCTGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCTCCTTCAAACATAAAGGGAAGGGTATTTTTTAATAATTCTGCATCTTCATCACTA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 96532-96699 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971094.1 Akkermansia sp. KLE1798 Scaffold332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 96532 33 100.0 36 ................................. GATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGC 96601 33 100.0 33 ................................. GCCGAGAAGTCATTACCGAATACAAGCCGACGC 96667 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 98.0 35 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTTTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCTGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGCGCTGTTTGACATGGTCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGTAGATTGACATTCAAACATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCGAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTTGAAGCCTTAACGGTCCTTCAATTATGATTGCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGTCCGGACAGTCATCATCAACAACGATCCTTGGGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGGACCCGCCCAACCATTGCCACACCGCCATTTCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACAATCCCCAGTGCTACATCGGGGTCGACACGGGCGA # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 96796-97300 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ971094.1 Akkermansia sp. KLE1798 Scaffold332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 96796 33 93.9 34 NN............................... TGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGA 96863 33 100.0 34 ................................. TGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCA 96930 33 100.0 34 ................................. TTGAAGCCTTAACGGTCCTTCAATTATGATTGCA 96997 33 100.0 34 ................................. TGTCCGGACAGTCATCATCAACAACGATCCTTGG 97064 33 100.0 34 ................................. TGGACCCGCCCAACCATTGCCACACCGCCATTTC 97131 33 100.0 35 ................................. AATCCCCAGTGCTACATCGGGGTCGACACGGGCGA 97199 33 100.0 33 ................................. TCGCCCATGATGTCCTGGCGCACGACCACCCTG 97265 32 87.9 0 .......................-.....T.CG | CT,C,C [97285,97289,97294] ========== ====== ====== ====== ================================= =================================== ================== 8 33 97.7 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : AAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGCGCTGTTTGACATGGTCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGTAGATTGACATTCAAACATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCGAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGCCGAGAAGTCATTACCGAATACAAGCCGACGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATAATTAAAAAGCACCCCGGATCAGGTAAGTCCGGGGTGCTTTTTTGTTTTCTACCGCAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGCTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCCGTATCCCGGAACACGCGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCTACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //