Array 1 257540-258788 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGE01000012.1 Escherichia coli strain 545 BN4_545_1_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257540 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 257601 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 257662 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 257723 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 257784 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 257845 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 257906 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 257967 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 258028 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 258089 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 258150 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 258211 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 258272 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 258333 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 258394 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 258455 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 258516 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 258577 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 258638 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 258699 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 258760 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284488-286346 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGE01000012.1 Escherichia coli strain 545 BN4_545_1_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284488 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 284549 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 284610 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 284671 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 284732 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 284793 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 284854 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 284915 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 284976 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 285037 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 285098 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 285159 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 285220 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 285281 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 285342 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 285403 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 285464 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 285525 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 285586 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 285647 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 285708 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 285769 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 285830 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 285891 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 285952 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 286013 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 286074 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 286135 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 286196 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 286257 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 286318 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //