Array 1 24852-25951 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOC01000027.1 Ligilactobacillus ruminis strain BIOML-A19 scaffold27_size25998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24852 30 96.7 38 .....A........................ GTGGTTATCAGAGCACATGACTTCAAAGCCACAATCAC G,AG,T [24855,24858,24862] 24924 30 100.0 37 .............................. TCGAGCAGCAGCAACTCTTTCTTGCCCGGTGCCAGTC 24991 30 100.0 35 .............................. GTAGGCATTTTCCAGTTTACGTCTACCTATGTAGC 25056 30 100.0 36 .............................. GTCTAGCCAGTGACCATTATAGTTAATTGCATCCGT 25122 30 100.0 39 .............................. AGGAACCGCCTGCCGCAAACGAGGTTGCGCATCGCGCTT 25191 30 100.0 35 .............................. CTACCGCTCAGGTCAAGGGGCGTCAAGTCAACCGA 25256 30 100.0 36 .............................. TGGAATCGTAGGCACCGATGACGGCAAATTAATTCT 25322 30 100.0 36 .............................. GACATAATCGATTGCTTCGCTAAGATTGTCGGCAAT 25388 30 100.0 36 .............................. ACAAGTTGATGTTACCAGTTGCAAGGTTATGTCCGT 25454 30 100.0 35 .............................. GCATAGTAATCCTGCTTATAGTGCATATGAAGTCA 25519 30 100.0 38 .............................. TACGATATAGCCGGTTATGTTGTTATTTAACTAGTCTG 25587 30 100.0 37 .............................. CACAGGAAGATGATTTATATTTTCGTAAGGCTTATTA 25654 30 100.0 39 .............................. AATAGCAGGTTATTCTGTTACAAACAGTCTTGTTTTCAA 25723 30 100.0 36 .............................. GAAAATGGTTACGAAACTCATTCTCAATGGGGCTTA 25789 30 100.0 36 .............................. ACTCAACGTCACGAGAACACAGGTCATAACCGTATC 25855 30 100.0 37 .............................. ATTCAGCAGTTCTTTTTCCTCATCTTCAAGCTTGTTA 25922 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 99.8 37 ATTTACATTCCTCATCAGTTAGATAAAAAC # Left flank : TCTCTTCTTGAGCTTTCGCAACACATTTCGCTCGGAGAACTGATCCACATCTACAAGCTCATGAGCAAGCGCAACCGCAAAGAAATCGCATCCATATATGACTGCAGCGCAAACGAGCTCATCAGTTGGATGGAATGCATCGCGCTTTACCGCAACTGCTGCTGTCACAACGGAAACCTGATCGATATCAAAATCGAAACAAGGCCCGTAACGCCCCGATCATATTCCAAATATCTTTTTCGCATGAAAAATACAGAGACGACAACGAACAGGTTCGCACTGGGCTGCGTTGTCATACTGCATTTGGCAAAAACAATCAACGTTGAAAAAGAAGAAACGGATGCGTTGAAACAGGCCATCTTAGCCCTTTCAAACGACAAGACGACGCTTGAATCCTATGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGAATGAGGCTAAAAACGATTTAAATTTATATGATTCCGTTGTTTTATTTTTTTATCGTCACC # Right flank : CGGCACTCGCCTTGTTGGCGTCGATTGCCTTACGTATATATTTACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCATCAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 926-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOC01000042.1 Ligilactobacillus ruminis strain BIOML-A19 scaffold42_size11170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 925 30 100.0 36 .............................. TAAAGTCATTGATTATGTATGCACAATGATCTATGA 859 30 100.0 35 .............................. AAAAAATCGCAAAAAACGGTAGTCAGTCTGTCTTT 794 30 100.0 37 .............................. ACATTTGCGACGTGGCCACTGGTCGCATTTTTGGACC 727 30 100.0 36 .............................. ATCCACTCGGTCAAGGGATAGGCTCTTTTAGTAATA 661 30 100.0 39 .............................. TCTTCTCGAAGGCTTGAGCAACGATTTTAGCTAACTCAT 592 30 100.0 35 .............................. AGGTGTACACAAAAAACAAAAGTTTACGCTAAATG 527 30 100.0 36 .............................. GAAGTCTGCTTGGCTTGTGCCGACGTCTGCAGTATC 461 30 100.0 37 .............................. TTATGCCCCAGCTAAAAGCGACGCTTGAAAATGGCGT 394 30 100.0 37 .............................. TATGCGCTAAAGTATGTTGGCAACGATACGAATATTT 327 30 100.0 37 .............................. GGTTCAATGGGTTCTTCACATTTTGCAAGCAATGTAT 260 30 100.0 37 .............................. AGCGTTTACTATGGCAATCCTTATGACGGGATTATTA 193 30 100.0 37 .............................. ACCTACATTGTTGACGCTTTTCAAGAATGTAACCTTG 126 30 100.0 37 .............................. AAGGCGTATTATTATGGTTTTAATGAGAACGGTATTA 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 100.0 37 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAGCTATGGA # Right flank : TTGGTATGATGATGATGCAGACTATAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //