Array 1 3042891-3044387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035495.1 Xylanimonas allomyrinae strain 2JSPR-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3042891 29 100.0 32 ............................. GCGCCTGCCGAGGACCGAGCGCGAGCCGATGG 3042952 29 96.6 32 ............................G GCGTCGCGTGCGGCGTCGTCCAGGCCGTGCCC 3043013 29 100.0 32 ............................. CGCGAGTGGCCGCCCGAGATCGAGGGGTGGCT 3043074 29 100.0 32 ............................. GAGTCGGGCGAGGGTTCGGGACGCGCGACCGG 3043135 29 100.0 32 ............................. TACGTCCAGGCCCACCTCGGCCACGAGTCCAT 3043196 29 100.0 32 ............................. TGCTCGATGCTGATGACGGCCAGGTCCTCGTA 3043257 29 100.0 32 ............................. CTGCGGCGACAGCCGGGGTGACCACGGTGCGC 3043318 29 100.0 32 ............................. CGGAGCGCAGGTCCCTGAGGTACCGGGCGTGC 3043379 29 100.0 32 ............................. CCACACTTTGTGGGGGTGCAAGCCCAAGAGGG 3043440 29 96.6 32 ............................G CTCGAACACCTGACGCGCGAGCATGGCTGCGA 3043501 29 100.0 33 ............................. TGGCCGGCGGCGACGATCACGCCGGACGCCGTC 3043563 29 100.0 34 ............................. AGGCCGAAGGGGACGGCGCTGACGGGCCACTGGT 3043626 29 96.6 32 ............................G GTGATGAAGTCGGTCTCGCCGAAGCGCATGGG 3043687 29 96.6 32 ............................G CCGACCGCGTCGGTGGCGGGCAGGAGGTCCCA 3043748 29 96.6 32 ............................T GCTCTGACGCTCGCCGGGGCCTACCAGTACCG 3043809 29 100.0 33 ............................. TCTGTGGTCGACTGATTCGACCACGGGGAGGCG 3043871 29 96.6 32 ............................G GCTCTGGCCGACAATGGCGCGACGCTCGACAT 3043932 29 96.6 32 ............................G GCAGCCATCCGCGCCGGACGCCGCGACGTGCT 3043993 29 100.0 32 ............................. CAGATCGCCCTGCGCTTGGAGATCGTGTTCGG 3044054 29 96.6 32 ............................T GTCGGCAACCCAGTCGGCATCGTCGCCTCGAG 3044115 29 96.6 32 ............................G GCGAGCGACGCCTTCCTTGCGTCACTCGGGAT 3044176 29 96.6 32 ............................T TGCTTCGTTGAGGCCGAGACGGACACATAGGC 3044237 29 100.0 32 ............................. GTAACCGCCCGCAGCCGCCCGAACGCGAGCTC 3044298 29 96.6 32 ............................T CAAAGGCGGGCACCCGCGTGATCCCCCTCGTA 3044359 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 25 29 98.4 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GTCGTCGTGCTGTCCGTGACACCGGAGAAGCTCCGCGGCGAACTGACACGGTGGCTGCTCGAGATCAGCGCGGGCGTCTACGTCGGACACCTGCCGGCACGGGTCCGCGAACGCCTGTGGACTCGGATCGTCGACGACGTCGGCCGCGGAAGAGCGCTCATGGTCTGGTCGGCACGCACCGAACAGCGACTCGCGTTCCGCGTCCACAACCACGCGTGGTCCGTCGAGGACTTCGACGGGATCGCGCTCATGCGACGACGTTCCGTGCGGCGCGATCCCGCGAGCGCCGCAGACCTCCCGCCCCGGCAACCGGGCGAGAAACCCGAGGACCACGAATCGTCGGGAGGCACGCGCACCTGGAGCAACGCCGGCCGACGCCGCCGGTACCGCTCCAGCGTCGAACAACGCCGAATCACGCTGAAAGGTCAAGACAGAGACCCCGAGGCGGACGAGTGAACGCGAATGATGGCGGGAGGCGATAGCGTCCCTGGTCAGGAAGT # Right flank : GGAGTGACCCATGGCTGGGACCAACATCCCCTCGTGTTGGTCAAGCCCCAGCAGGTGGTGTAGCGCGTTGTGATCCTTCGTCGTGTCGGTCAGGTCAGGCGGCGGCTCCGAGGGTCAGCGGCTGGGCGGGGACGACGTCGGTGGAGACGGCCAGAGGGGTGCGTGCCTTCTTGAGGGCGTCGAGGGAGAAGTAGCGGCGCCCTTCGGCCCACTCGTCGTGCTGTTCGGCCAGGACGGCGCCGACGAGCCGCACGATGGCGTCACGGTTAGGGAAGATGCCCACGACGTCGGTGCGACGGCGGATCTCCTTGTTGAGCCGTTCGTTGGGATTGTTCGACCAGATCTGTCTCCAGATCTCCTTGGGGAACGCGGTGAACGCGAGGATGTCGGCGCGGGTGGCGTCGAGGTGGTCGTGCACGTCGGGCAGCGGGGTGGCGACCATGTCGAGGAGCTGGTCGAACTGCGTGGTCACCGCCGCGGGGGTGGGCTGGTCGTAGACA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3045864-3047234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035495.1 Xylanimonas allomyrinae strain 2JSPR-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3045864 29 100.0 32 ............................. TCGACGCACAATCTCGCGAGCAAGCTCAAGGT 3045925 29 100.0 32 ............................. AAGGAAGCCCCCCACCTGACTGTGCAGGTGGG 3045986 29 96.6 32 ............................G ACCTTCCAGCAGATCGGGTCGAGCGCGTCGTG 3046047 29 100.0 32 ............................. GTGAACTCGGTCTTGGCGGCGAGCTTGCGGTT 3046108 29 96.6 32 ............................T GCCTGCGCCTCGGAGCGGTGCTTGCGGTCGAT 3046169 29 100.0 32 ............................. GTGCTCGGCGCGACTCCGAGAGCGTCCGCGAG 3046230 29 96.6 32 ............................T GAGGGTTTGAGATGACTGACTTCCTGCCCATC 3046291 29 96.6 32 ............................G TCCCCGACATCGCGCCCGGTCCGGAGGTCGAC 3046352 29 100.0 32 ............................. CGAGATCGGAGCGCTCAGCGCGCCGCCCGGAT 3046413 29 100.0 32 ............................. GGCCCGCCACCTGCATTATGCGAGGTGGCGGG 3046474 29 100.0 32 ............................. CCGCGCCGAGTGCCGTGCTCGATGCGCTCGAC 3046535 29 100.0 32 ............................. GACTGCGCGTAGCCCGAGCGCACCTGGCCGGT 3046596 29 100.0 32 ............................. GACCAGACGAATGGCAGGGGGTGACCGTCCAT 3046657 29 96.6 32 ............................T CGCTCGACCTGCTCGGCCTCAGCGGGCAGCAG 3046718 29 96.6 32 ............................G ATGCCGCGACGATCCTCGTCAAGGATCATCCG 3046779 29 100.0 32 ............................. TCGGGCAAGAGCCTGCGCGACGCGATCGACCT 3046840 29 100.0 32 ............................. CACGGTGTCGCTTCCATCAGAGAGTCCTCCAT 3046901 29 100.0 32 ............................. TGCACCTGCGTGATCGGGGCGTCAGCGTTCTC 3046962 29 100.0 32 ............................. GGCTAGCGCCTCCGCCGAGAACGAAAACGGTG 3047023 29 100.0 32 ............................. CAGGCGCTCGACGAGGCGTCCGGCAAGGCCCG 3047084 29 100.0 32 ............................. GACTTGCTCGACGCCCTCGGCTACACGTCGCT 3047145 29 96.6 32 ............................T GCCGACGCCGTCGTGCCGGTCAGTCCGTGCGC 3047206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TTGTCCATCCGGCGCGTCGAGACGCCTGCCAGGTAGCAGTCCGCGACCACGGTGGTCAGGGCGGACTCGGCCCGCTTGCGGCGCTCGAGGAGCCAGTCTGGGAAGTAGGTCCCCTCGCGCAGCTTGGGGATCGCCACGTCGATCGTCCCGACCCGGGTGTCCAGGGGCCGGTGCCGGTACCCGTTGCGCTGTGTCGTGCGCTCGGGCGAGCGTTGGCCCCACTCGGCGCCGACGACCGTGTCGGCGTGCTCGGAGAGCAGGGCGTTGATGATGTTGCCCAGCATCGTGCGCATGAAGTCCGGGGAGGACTCGGCCAACGCTTCGTGAAGCAGGCGGGCAGGGTCGATCATGTGAGGTGCGGTCATCGCGGGTACTCCGTTCGAGCGAACTTGGGAAGGTTCAACTCGAAGGATCACGCGGTGGCCGCCTCTCATCTCCCGGCTGTCACGCCGGCGACGGCCACCTGGCCGACCTACACCACTCTGCGGGACTCAACTCTC # Right flank : CGTCGAGCACCCCGGCAGGGGGATCTGCTCACCAGTTGAGTCCCGCAGAGTGGTGTAGGTCGGCCAGGTGGCCGTCGCCGGCGTGACAGCCGGGAGATGAGAGGCGGCCACCGCGTGATCCTTCGAGTTGAACCTTCCCAAGTTCGCTCGAACGGAGTACCCGCGATGACCGCACCTCACATGATCGACCCTGCCCGCCTGCTTCACGAAGCGTTGGCCGAGTCCTCCCCGGACTTCATGCGCACGATGCTGGGCAACATCATCAACGCCCTGCTCTCCGAGCACGCCGACACGGTCGTCGGCGCCGAGTGGGGCCAACGCTCGCCCGAGCGCACGACACAGCGCAACGGGTACCGGCACCGGCCCCTGGACACCCGGGTCGGGACGATCGACGTGGCGATCCCCAAGCTGCGCGAGGGGACCTACTTCCCAGACTGGCTCCTCGAGCGCCGCAAGCGGGCCGAGTCCGCCCTGACCACCGTGGTCGCGGACTGCTACCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3048711-3050450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035495.1 Xylanimonas allomyrinae strain 2JSPR-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3048711 29 100.0 32 ............................. GCCTGCGCATCCTGACGTCAGTTCCATCCGAG 3048772 29 96.6 33 ............................G GGAGGCCATGCTGCCGAGCAGGCTTCCGACGCG 3048834 29 100.0 32 ............................. GGGTTGGTGATCCGGGTCGCGTACCCCTTGCC 3048895 29 96.6 32 ............................G GCACGCGGCGTGGAGCCGCTGACGGCCGACCC 3048956 29 96.6 32 ............................G CACTACAGCGCTGACAACCTGCCGCCGTCGTG 3049017 29 96.6 33 ............................T CTGGCGTGGACAGGGCGGCGATGGTCGAGCCGT 3049079 29 100.0 32 ............................. GGAAGCCCCTTCCGATGGGAGGAACTGTCCGC 3049140 29 96.6 32 ............................G CTCCTCCCCGATTGGAAGGGCCCGGCGGAGGT 3049201 29 96.6 32 ............................G TCCTGGGCCTCCGTCACCACCATGGTGATGCA 3049262 29 96.6 32 ............................T GCGGTGTCGGTGAGTTCCCGGTCGAACACGAC 3049323 29 96.6 32 ............................T GCGTCGGCGGTGACAGCGAGCCCGACGCCAGG 3049384 29 100.0 32 ............................. ACCAACTGGTCGCCCCGCCCGGGCTTCCCGAG 3049445 29 96.6 33 ............................G TGGTCGTGCAGGTGCGAGGAGTGGGACGCCTCC 3049507 29 96.6 32 ............................T GCGTCACCGAGCCGCGTACCAATGTCATCCAT 3049568 29 96.6 32 ............................T GTCGCCACCGTCGCATCGCCCTCATAGAGCGC 3049629 29 100.0 32 ............................. TCCTCGATGGCATCGACCTCGGAGCGCACCCG 3049690 29 96.6 32 ............................G CTCTCGGACGACTTCTACGACCACCCGAAGTT 3049751 29 93.1 32 ......................A.....A ACCGCGACACCGTCTCGTCGTCCAGAGTGTGC 3049812 29 100.0 32 ............................. GGGGAGTACACGTCCCTGTCCAGGTCGAACGC 3049873 29 93.1 32 ..........................T.G GCTCTGGCCGACAATGGCGCGACGCTCGACAT 3049934 29 100.0 33 ............................. TCGGGGAACGAGTAGACGTCCGAGTGCCCCTCC 3049996 29 100.0 32 ............................. TTGGCCCGCACGCCCGCGCCCTGACCGCCGAG 3050057 29 96.6 32 ............................G TCGGTGATCGCGAGCGCAGAGTCCGGCAGCGA 3050118 28 93.1 32 ....................-.......G TCGAGGCCGAGCGCCTCGACGAACGGCTTCAG 3050178 29 100.0 32 ............................. CACCCCGACGTCGACCACCTGCAGGCGGACAT 3050239 29 96.6 32 ............................G ACGGTGGTTGGGCAGGTGCCGCCGCATCGCGC 3050300 29 96.6 32 ............................G AGACGGTGGCGGCGCACGCGCAGCCCGAATGC 3050361 29 100.0 32 ............................. GCGAGCGCGTGCCCGCCGGGGCGCAGCACGCG 3050422 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.5 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CTGGCCGGCCGTCAAGGCGATGCTGCACTCTGTCTACGACCAGCCCACCCCCGCGGCGGTGACCACGCAGTTCGACCAGCTCCTCGACATGGTCGCCACCCCGCTGCCCGACGTGCACGACCACCTCGACGCCACCCGCGCCGACATCCTCGCGTTCACCGCGTTCCCCAAGGAGATCTGGAGACAGATCTGGTCGAACAATCCCAACGAACGGCTCAACAAGGAGATCCGCCGTCGCACCGACGTCGTGGGCATCTTCCCTAACCGTGACGCCATCGTGCGGCTCGTCGGCGCCGTCCTGGCCGAACAGCACGACGAGTGGGCCGAAGGGCGCCGCTACTTCTCCCTCGACGCCCTCAAGAAGGCACGCACCCCTCTGGCCGTCTCCACCGACGTCGTCCCCGCCCAGCCGCTGACCCTCGGAGCCGCCGCCTGACCTGACCGACACGACGAAGGATCACAACGCGCTACACCACCTGCTGGGGCTTGACCTGCTCACC # Right flank : CGCTGTCGACGACGCCTGAAGTCTGGACGGTTGCGACGCTCGAAAGGTGAACACTCACGACGATCGGAGAGTGATCACTTTGGAGGACTGGGCGTTGATCCGGCGGTTGGCCGGCGAGGGCGTTCCGAAGGCTCAGATCGCGGCGCGGTTGGGGATCTCGCGCACGACGGTGGTCAAGGCGGTGGCCTCTGCCGGGCCGCCGAGGTACGAGCGGCGGGCAGCGTCGACGGCGTTCACGCCGTTCGAGGCGGCGGTGCGGCGGTTGCTGAACGACACCCCGGACATGCCGGCTACGGTGATCGCCGAGCGGGTCGGGTGGACGGGGTCGATCACGTGGTTTCGGGACAACGTGCGGCGGTTGCGGCCCGAGCAGGCGCCGGTGGATCCCGCTGACCGGTTGACGTGGCTGGCCGGGGACGCGTGCCAGTGACTCTCCTATGTCTCGTCAAGTCGTGAGCAGTGGCACGGCGGCCGCGTTGAGGTAGCGGTAGATGTGCCGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3054016-3055062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035495.1 Xylanimonas allomyrinae strain 2JSPR-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3054016 29 100.0 32 ............................. GGCCTCACTGCACTGCAGGTCAAGGCGTTGCG 3054077 29 100.0 33 ............................. CAGTACGAGCAGGTCGGTAACGCCGTCCCGCCG 3054139 29 100.0 32 ............................. GCGGCGCGGGCCCGGGTGCTGCGGCCCGCCAG 3054200 29 100.0 32 ............................. TTCAACGAGCGCGCCCACCGCTACTGGCTGGA 3054261 29 100.0 32 ............................. GCCCTGTTCGACCGGTACGGCGACAAGCGTGG 3054322 29 100.0 32 ............................. GCCGGTGCCCGCGGAGTCCGCGAGGATGCCGT 3054383 29 100.0 32 ............................. TTGACGATCGCCATGGGTCGGCCCTCCTGGGG 3054444 29 96.6 32 ............................C GCAATCGAGGAGATGGCGAAGGCGGGCGTCTC 3054505 29 96.6 32 ............................C CCCGTCACGAGCGACGCCTGCTTGCCGTACAC 3054566 29 96.6 32 ............................T CGCTCGACCTGCTCGGCCTCAGCGGGCAGCAG 3054627 29 96.6 32 ............................C CGTGTCAACCCGAGACGGGCAGCAGTTTCGCT 3054688 29 96.6 32 ........................C.... CGCGAGATGACCGCCACCTTCACAGCCACCCT 3054749 29 100.0 32 ............................. CCGGTTGAGACGAAGGCCGCGCCGGCGCCAAC 3054810 29 96.6 32 ............................C GGTGCCGGCTTCCCCGTGGTCACGCGCTGGCG 3054871 29 96.6 32 ............................C GTGATCGCGACGTACGCCTTGATCGTCGAGGA 3054932 29 100.0 32 ............................. CCCAACGGGTCCAAGGCCCCCGCGATCGGCAT 3054993 29 75.9 11 ....G..G...C...T....CG....T.. AGCACCCTCGA Deletion [3055033] 3055033 29 72.4 0 .C..C...T...TC.......GAA..... | T [3055052] ========== ====== ====== ====== ============================= ================================= ================== 18 29 95.8 31 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GGCTACCGGGTCCTGTTCGCGACGGCAACCGGCTGGGTCACCCGCCTGACCGACGCCCACCGCGCCGGCAAACTGCCCCAGGACCTGGCGAAACTGCGCCGCTACGGTCTGATCATCATCGACGAGGTCGGCTACCTGCCCTTCGAGCAAGACGCCGCGAACCTGTTCTTCCAACTCGTCTCGGCCCGCTACGAACACGCCTCGCTGATCCTGACCTCCAACCTGCCCTTCAGCGGCTGGGGCGGCGTCTTCGGCGACCAAGTCGTCGCCGCAGCGATGATCGACCGCATCGTCCACCACGCCGACGTCCTGACCCTCAAAGGCGCCAGCTACCGGCTACGCAACCGCGGCCTCGACACCCTGCCCAGCATCCGCGAGACCACCGACCCCCAGCCGACCTAGGCTGGCCCCACACCGTTCACTTTTCGAACGCCGAAAGTGTTCAGTTTTCGAGCGTCGTCGACACCCGCTCGCCCGGAGGACATGGCCGCGGCATGCGA # Right flank : GTCGGTCGGGCGGTCTCCCCATCGCCTTCCCCGGCCGCACCCAGTGCTGCTGGATTCTCAGCCCTCGGCGTCCGAGGTTCAGAGGTACTGCCCGGGCGAGGGCCGCCCGTCTTCCGCGCCGTGTGGCAGCCCGTGCGCTTCGGCTCCGCGGACGGCTTCGGGTCCTGCGGGTCCGGGGAATGCCCCGGGCGGGAGCCCGCGTCGCATCTGTGAGAGCTGCGCCTGTGCCGCCATCTGTTGTGCGACGAGTGCCGTCTGGATTCCGTGGAACAGTCCTTCGAGCCATCCGACGAGTTGCGCTTGCGCGATGCGTAGCTCGGCGTCCGACGGCGGTGTGCCGTCGTCGGCGAACGGCAGGGTGATGCGGTGGAGCTCGTCGACGAGGTCGGGGGAGAGGCCGCCCTCGAGCTCGTGCAGCGAGCGTTCGTGGATTCCGGCGAGGCGCGCGCGGGCGGCGTCGTCGAGCGGCGCGTCTCGGACCTCGTCGAGCAGTCGCTTGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //