Array 1 74005-75073 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIS01000002.1 Ruminococcus sp. AM36-17 AM36-17.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 74005 30 100.0 34 .............................. TATGTTCTTCCATAAGTTTCGTGATATTCAATAC 74069 30 100.0 37 .............................. AATATTCTTCCTGCGTCTTTACAAACACGCTTTTTCC 74136 30 100.0 36 .............................. GAATCAGAATGTTTGAACCATCCGTAATATGCTATA 74202 30 100.0 34 .............................. CCAATTCAATATCACTGTCTTCATATCCTAATTT 74266 30 100.0 34 .............................. ACTTCTAATGTAACAGCACCTGTGTCGGCATCTA 74330 30 100.0 35 .............................. CGCTGATTGACTTCAAGGGGTCAAGCCGGAGTTCT 74395 30 100.0 34 .............................. TACAGTTCGAAAGAAGCATATCGGACAGCTTATA 74459 30 100.0 34 .............................. GTTAATGGTTTTTCCTCTATTATTTCACCTTCTA 74523 30 100.0 36 .............................. GCTCTGGGCGGATATGGAGCTTACAAGCCTTATACT 74589 30 100.0 35 .............................. GCGCAATAAGGTATACTGTCATCTTGCTGTTGATC 74654 30 100.0 37 .............................. CCAAAGTGCCACAAGAACCAGAGGATAGCCCATACTT 74721 30 100.0 35 .............................. GGCTGTAACTTTTTTTCTGCGCTTCCAGTTTCTTC 74786 30 96.7 36 ............T................. TGAACGACTGATGTTCCAAGTGCGTCTTGTTCTGCA 74852 30 96.7 33 ...............A.............. TATCCCTGGGCAAGTAAATCATCTCTGGAACCG 74915 30 100.0 35 .............................. TCTGCACGCGGAGCAGGAGCATAGTCCCCTTACTA 74980 30 100.0 34 .............................. GTTTGCACCATCTGCAACTATTAAAGATTACCCC 75044 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.6 35 GATAAAGAGTAACATGAGATGTATTGAAAC # Left flank : TTTTATGATGTAGGAGAAAAAAGGGTACAGAAAGTATTTAAAATCTGCAAAAAATATTTATCTCATTTCCAAAAATCAGTTTTCAGAGGGGACATGACGCCATCAAAATTCATACAATTGAGAAATGAACTGAATCGAGTGATAGATAAGGAAGAAGATTTTGTGTGTATTATAAAATTGATGAATGATAATGTGTTTGGAGAAGAAGTACTTGGAAATGGAAAAAAAGATAATGGAGAAGATTTGATTTTGTAGTAAAAGAATTCTCCTGTCAGTGTGAAAACATGACAGGGGAATTCCTTAAGTAAGTTAAATGAAAAGTTATAAAAATTACCAGGCGGATTTTCATAAAAAAATGAAAAATATTGAAAATACGGGGGTATACCAGGTTTTGATTGAGTAAATAAAAAATGAGATGTCGGTTGGTAAAAATCTTGCAATCCTTTGTATTTTGCTGTATTATAAAAACTGTTAGAAGAAGAAAAGCCTATAAAACGAGG # Right flank : CAATATAAAATGTTGTATATAATGAAATTGCTCTGACAATAACAAATATCCAATCCACAACTCATTTATATCTGTTAACATATAGCAACATAAGTATGGAAAATAGAGATTAACATAAAATACAATGTATAATATGTATATAGAACCGAGACAAAAGGGAGGATCATGTATTGAATTCAGTCAAAAAAAAACTTCCAATAGGAATAGAAAATTTTGCAAAGCTTCAGGCGGAAGATTTCTACTATGTAGACAAAACGATGATTATCAAAGAACTTCTGGATAATTGGGCGGAGGTGAATCTGTTTACACGTCCGAGAAGATTTGGTAAAACACTGAATATGAGTATGCTGAAAGCATTCTTTGAATTAAACGGTGATAAGAACTGCTTTAAAGGAACAAGAATTTCCAGAGAAGTTTATCTTTGCGAACAATACATGGGAAAGTTCCCTGTGATTTTTATTTCCCTGAAGAGTATCAGCGCGCAAACTTATGAAAAAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAAGAGTAACATGAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 9382-8071 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIS01000040.1 Ruminococcus sp. AM36-17 AM36-17.Scaf40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9381 29 96.6 32 ............................C AAAAGCCCCAGCCCGGAATTTCAGGCTGGGGC 9320 29 100.0 32 ............................. GCGCAACAACAACCGAAAGCAGACATTCAGCC 9259 29 100.0 32 ............................. ATTTTCCTTTCCTCCGGCTGTTTTCCTTTCGT 9198 29 100.0 32 ............................. CCCGGTACGGCATTTTCTTCCCAGTTTCGCAA 9137 29 100.0 32 ............................. CACTGGAAACCCGGTTTTTTATGTGTAAAATC 9076 29 100.0 32 ............................. GCTGTTGGACAAAATAAAGCACTTGAGCAAAT 9015 29 100.0 32 ............................. CAGCAGCCAAGGCAGAAATGCGAATGCAGGCA 8954 29 100.0 32 ............................. GCTTCAACATAGTTCTCGCACTCTTCCAAAGT 8893 29 100.0 32 ............................. TAACCCCGTACCACTTAACGCAGGCGTTAAAT 8832 29 100.0 32 ............................. GCAGAGGAACGGGCACGAGCTGCGGAGATGCG 8771 29 100.0 32 ............................. GTCGTCTAAATATTGCTGCAGTTTTCGGCTCT 8710 29 100.0 33 ............................. CAGTGCAGGAAAAGGTTTCAGAGTTTCTGTTAT 8648 29 100.0 32 ............................. TCAGCGTTAAGAACGGCAGACCGGGAACCCAT 8587 29 96.6 32 .................A........... ACATAGCAGACCAACTGGAAGAAGAAAGCGTA 8526 29 93.1 32 ...................T........A TATATTTTGTAACATTAATTGTTCAGAAAATA 8465 29 100.0 32 ............................. TGTACACCTTTATGAGACGCTAACGCCAGAGC 8404 29 100.0 32 ............................. ATGATTACCTGCAGCCGCTCCTGTTGTCTTGC 8343 29 96.6 32 ............................T GCTGATTTTTCTAGTTTCACAGTATAGGCAGA 8282 29 100.0 32 ............................. TTGAAGCGGATTTTGAACATCATAAAAGAATA 8221 29 100.0 32 ............................. AAGAGAATCTGGAAAAATTCCGTCAGGAACTT 8160 29 93.1 32 ...................A........C CCCCGGCAGGGCGAACGGCAAAGCGGAGCTTT 8099 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTTCCCTCATTATATGTGAGGGTATATCG # Left flank : TTCCATTAAAATTTTTTCGCAAAAAATCGTCTCGTTTTTAATTTTTTCGGCATATTAAATATGCAAGAAATTTAACAGAGAATGGGAAATCCACGGCCGACAAAAAAGTCGTCTGCGGGTCAAATGTTCAGGTTTTAACTTCGCACGCGGGTCTGAAGCTCCGTTCTCCCCGTTCATGCACTACACTCAGCCTTGCGGCTTCGTTTGTCAGCGGCAAAAGCCGCTTGGTTACGAGCGCGAAGCGCGAGTTATCAAATACAAATTTTTACAAAAGGAGGTGCCTTGCATGGAAATCACTTCAAGCTATCAGATAGAAATCTTATCAAATACAGATATGAAAAGCACAGTGCAGATTTACCGCAGGGCACTTGCTTTCGTTATTGATGTATGCAATAAAGAGCTTTAGCATATTAAATATGTGGATGAGAGATTAGAAAGACATTTGTGCAATTTGCACAACGAGGTGTTTGAGGCGGCTGAAAGCCGCATAAATACTGAGT # Right flank : AAATTGGCAATGGCATCCTTCAGGCATCAAAAAATATAAATGTAGTTGACGATAGTATCCCGCAAATTGCCTAAAAGGAGGTGAAAAAAAATGAGTGGAGACACCGAATTCTGAAACACAACAACGCCACATACACAATACACAACATTTACAGCCCGGCAATTCTTTTGCCGGGCTTATTTTTACGTTTTTCGCTATTTCAAAAATCCCGCATATTAAAACCGTAAAAATATATTTAAAACTAAAACAAAGAAAAGGAGACTTAAAAAATGAGTAAAAGCAAATGGATTTACAAAAACCTCAAAAGTACGGAATTCAACGTACTTGCAGAAAAGTTTGGTGTACATCCGGCCATCATTAAGATTCTCGCTGACCGTGGTGTGCAGGGAGAGGACGCTGTAAGGGAATACCTGGAAGCAGATATTGCAACCGTTTCTGATGGTTCTGAATTGACTGATATGCAGCGTGGCGTTGATGTTATCTACGACGCAGTGAAAGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCATTATATGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 12499-11920 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIS01000040.1 Ruminococcus sp. AM36-17 AM36-17.Scaf40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12498 29 100.0 33 ............................. GAAGAGGGATGAGTGACCAAAGGGAGGGCATCC 12436 29 100.0 32 ............................. TTTTGTCTGCAATTCGTTTCTGATTGCCTGCT 12375 29 100.0 32 ............................. CGTTGGTTCATCTGATTTCTGATTTCTTGACC 12314 29 100.0 32 ............................. TTACGAATCTTATATTCATTATCTTGAAGAAC 12253 29 100.0 32 ............................. AACAAGAACAAAGGCTGCATGAAGTTAAAGTA 12192 29 96.6 32 ............................A TTTGTCGTTTTCCTCATTTGTCTTTCCTTGGA 12131 29 100.0 32 ............................. CACTGAAAACGAGGTTCTTCTTTTGTGAGATG 12070 29 96.6 32 .....T....................... TAATTTTCGCTGCAGAGTGTCTGTTTCAGTTT 12009 29 100.0 32 ............................. AAAAGAAATGCAAAAAAAGACGCAAAAATTGC 11948 29 89.7 0 .........T....T............T. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 GTTCCCTCACTATACGTGAGGGTATATCG # Left flank : TATTTTCTCAGCTTGGAGGATTGTCAGCAAAGTTCCCTCATTGTGCGTGAGGGTATATCGAGAATATATCGTTGCCACTACCACAATTAAATTTTTGCATACCTCGTCACAAAAAAAATAAAAAAATTTCCAAAAAATAATATTTCTTAATCATTTTCCAGCATATTGATATAGAGCACAAAAAAAGTAGGAAAAAATTATAATAAAGGAGAGTAGTTTAATGAGTGAGATAAATAAGTTATTGTGGTTTCTTTTAACACTATCTATTAATGGTCTGATATCTATTATTATCAGTCAGATAGATTCTAAGCGTACTTTAGAGATTTTATTTGCTGTTTTCTCAGTCATAATCTGTTTAGTATGTACTTGTTGGGTTTTCTTTGACTTCTGGAAGTAAAGTAACTAGGGTAAGGAAATATGTGGATGAGAGATTAGAAAGACATTTGTGCAATTTGCACAACGAGGTGTTTGAGGCGGCTGAAAGCCGCATAAATACTGAG # Right flank : GTCATTTTCGCTTCTTCCAGAATCCCGCATATTAAAAATGTAAAAATATTTCAAAAAATACACACAAAGAAAGGAAACCAAAAATATGAGTAATATATCTTTTCAGGATGGAGTAGTTTTCTACGAATGTTCAGCCAATGAGCTGATTGACGTTGAAATTGAAGATTACGTTGACGAGTTAGTTTTCGGAGAAAAAATTCCTTGCACTGTATATAACCTTCTCAACGTAAGCAAATCATTCCCGCAGATTAGAACAATCGTAATTGAAGAAGGAGTTGACAAAATCCAAATCTGGAATAGAACATTTCCAAATGTTAAGAAAGTGATATCTTACAACAAGAAATTTCTGTCCGGAAACGTTCTTAAAGGGCTCGGAAATTCTACCGGAAACGAAATTATCCTCTTTAATTCATTTGTTAAGAACGAATGTGAGGCGATTGATTTAAGCGAAGTTTCATGTATTGAAAGCCACGCTTTTGAAGATTGCAAATCCGGAAATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCACTATACGTGAGGGTATATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 92764-92927 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIS01000008.1 Ruminococcus sp. AM36-17 AM36-17.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 92764 30 100.0 38 .............................. CTGTATTCTCCACGATCTCTGGCGGCGAAAGACTACGA 92832 30 100.0 35 .............................. ATTGATGCACTTATGGAAACGGTTAAAGAAATCCC 92897 30 93.3 0 ........................A..T.. | T [92921] ========== ====== ====== ====== ============================== ====================================== ================== 3 30 97.8 36 ATTAAAGTAGAACCATATTGGAATGTAAAG # Left flank : AAAAAATGGATATAAAGGTGGAGTAACAGAAAAGAGCGTGCATTTGCCATGCGCGCTCTTTTCTGTTACTCCAATGATGCCAGTTAAAGATATAGATACCTGTTTAACTTTGGCAATGAGAAATTCCAATGTGGAACAACAGATACAATTAAAGTATATAACAAATCAGTAAACAAGTGCAAGAAATAAAAAAACAAATATAAACCAAGTATTATAAAATTATACTTAATAATAAAAACTATTGCATATGCAATGTCGATATGATGAAATGGGATATTATAGAATTGAATTTGCAGATGATGTAGATTAATAATGAAAAATTCTGTCGATGTTCGATAAAATAAAAATGCGAAGAGGTCGACAATGGTATGTAAACAAAGGGAATGAGTGGTTTTTTGATGAAAAACATGATAAAATGAATGGGAAAATAGAACAGATATAGTGAAGTCGACAAAAATGAGCAAATAAGCATAAAAAATATGCGGAACTGACAGCTATGG # Right flank : GATTCTTATGTTAAAATAGTTATTTAATTGATACAAATGATTAATTTTATTTAAGCCAATACGTATACATCAATTTATAAAGAAAAAGGAGCTTTTAAATATACTATGGAGAAACTTGTCATTGGTATCCTTGCCCACGTAGATGCAGGTAAGACTACGTTGTCGGAGGGGATTTTATATTTAACGGGAAAAATCCGTAAGCTGGGGCGTGTGGATCATAAGGATGCGTATCTTGACACCTATAACCTGGAGCGGGAGCGTGGAATTACGATTTTTTCCAAGCAGGCGGAGTTTGAATTGGGAAACAGGGGGATAACTCTGCTAGATACGCCGGGGCATGTGGATTTCTCGGCGGAAATGGAGAGGACACTGCAGGTTCTGGATTATGCGATTCTTGTGATAAATGGAGCGGATGGTGTGCAGGGGCATACTATGACCTTATGGAGACTTCTGGCAAGATACCAGATTCCGACGTTCCTGTTTATCAATAAAATGGATCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGTAGAACCATATTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //