Array 1 116252-118109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZG010000005.1 Salmonella enterica strain N19-2676 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116252 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 116313 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 116374 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 116435 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 116496 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 116557 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 116618 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 116679 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 116740 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 116801 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 116862 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 116923 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 116984 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 117045 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 117106 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 117167 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 117228 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 117289 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 117350 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 117411 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 117472 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 117533 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 117594 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 117655 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 117716 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 117777 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 117838 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 117899 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 117960 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 118021 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 118082 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134781-136884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZG010000005.1 Salmonella enterica strain N19-2676 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134781 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 134842 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 134903 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 134964 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 135025 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 135086 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 135147 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 135208 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 135269 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 135330 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 135391 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 135452 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 135513 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 135574 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 135635 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 135696 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 135757 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 135818 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 135879 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 135940 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 136001 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 136062 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 136123 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 136184 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 136245 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 136306 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 136367 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 136428 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 136489 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 136550 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 136611 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 136672 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 136733 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 136794 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 136855 29 100.0 0 ............................. | A [136882] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //