Array 1 12658-11610 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMY01000059.1 Photobacterium phosphoreum strain FS-1.2 CFSAN065480_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12657 28 100.0 32 ............................ AAGAATCCAAATCTAACTATGCCCAGTGGGGT 12597 28 100.0 32 ............................ ATAATAAAAAGGTAGCTGAAGCAGTAGATTAT 12537 28 100.0 32 ............................ CTAACTGGATTTTAATTGACTCCCTAAATTAA 12477 28 100.0 32 ............................ TTTACCAGCAAAACCCATAGCCTTATTCATAC 12417 28 100.0 32 ............................ TGAAAACTTTACGGGTCGTCGCTTAGTGAGTC 12357 28 100.0 32 ............................ AATTAACATCTTCTTCAACAAAATGCAGAAAC 12297 28 100.0 32 ............................ CGTCGTTAGCGACAACCTTCCTAAGCACATCA 12237 28 100.0 32 ............................ GACAACCTGAAATCAACTATTGCCCGTAAGCT 12177 28 100.0 32 ............................ TTTATTCTGCTCGTCAACTGCAACGCACTGGC 12117 28 100.0 32 ............................ AGCAAATACAGGGTGCTTGAAGTTACGAGAAC 12057 28 100.0 32 ............................ AATAAATATCGCAAGAAATAGCTGTGCAACGA 11997 28 100.0 32 ............................ CGTTTCAGATTGCTTAACCAAGTCAGATAATC 11937 28 100.0 32 ............................ TCAACAAACCCAATGCCGCACTTGATCATACT 11877 28 100.0 32 ............................ CATACGTTGTTTGATGTAGTCGATGTCGGATT 11817 28 100.0 32 ............................ TCCCCAAATGCGACATTAAAGCAAAATGCAAA 11757 28 100.0 32 ............................ TGTTAATAAACTTGTGATTAAATTTTCAGAAT 11697 28 96.4 32 .............C.............. TGCGAGTGGGGAATCATTATCGTTTTCATGGG 11637 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTACTTCGCACACTTATTCAAAGTGCTACCAACCCGTACTCCACAAGATGATCTCACCGATCTTATGCCCTGGAACTTCCCAATCGATGAGGCCTAATAAGGCCTCACTGCTTAATTGCGCGCTTACATTTGATGAGTGACCCCGTAGAGGGTGTATTTGACTCTTATGGCTTGAGTCGAACAGCAACAATTCCATGGTTTTAACCAATAAAAATAGCTCTTTAAAAAATCAATTTAAATACAACAGGTTACATTAAGTGTAAAAAACATTGGTAAAAGTTTAATTTTTATCTTAATTATTTGTTTTAACTTGATTTTTGATTTATATTTTAT # Right flank : TAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTACCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCAATCTGACAAACACAAAACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGAGCTGCGACGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATAAAGAAAGATAAATACAATAATATTGCGGCTCATATTTTTAAAGTAGATGCAGTGAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCGTACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGCAAAATAAATTATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5916-6243 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMY01000017.1 Photobacterium phosphoreum strain FS-1.2 CFSAN065480_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5916 28 100.0 32 ............................ AACACTTTCCATTTCATCGCCCAAATAGTTAT 5976 28 100.0 32 ............................ TTCCAATTCCCACAACTTGTTAGTTGCTGCTT 6036 28 100.0 32 ............................ AAAACCTATACCAATGATTGGTGCGTTATCGC 6096 28 100.0 32 ............................ TTTGTCACTGTCGATAAACAGTAATTCTTTTT 6156 28 100.0 32 ............................ AGGTGGATTGGACGGAACGGCCAAGGGGCAAG 6216 28 96.4 0 .......................A.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGTGCCGTGATGTACGCGGCTTGATAG # Left flank : CAACTTACACTGATGTGTCATGGAAAATACCTCGTGACTCCTTACTTCGTGATACCATTTTATTGGATAAATATGATCTTATTGAAAATTCAAAGGGCGAGATGGAACTTTGGATTGATGACCCCCATTGGCGAAATGGCTTAACTGATGATCGCCGATCTGTTAAATCAGTTGAGTCACTTTGCCTTCCTCATACAGTAGAGCGTTTTCCGTCGAAGAAATTTGATTTACAGAAGAATCTGCTTAGCATTATAGATAATGTTCTTTCCGATGAATTTCAACCTGAGAATGTCATTGTAGCATTGGAGGCTGTTCGGTCCTTGGCACTCATGACAGGATTAATTTGTATTGATGAATGAGATTGAATTTATACCTTTATTTTTTAGCATTTGTAACCCCTTGATTTATTGAAGATAAAAAGCAAAGGTTTTAAAAAGGGGTAAAGTTGATATTTTCAGGTAACATATTGAAAAAATGAAGAATATTAGAAGAAACCTTCA # Right flank : GTTTAAATCTGAATATCGCGGGTAAGGGGAAACGACTACCTTCGTGAATTAAATGCGTCGACAGTAATAAACAATAAAAAAGCTAACATCTGCTGTTAGCTTTTTAAATTCATCTCATTCAAAGTCTACTCAAAAATCGGCATCAACCTCAAACACCATTGGTTCGCCAGTGACTGGGTGGGTTAGGCCAAGATATTGCGCATGTAGGTGTAAACGATTCGATTTTTGACCATATAAGTCATCACCGACAATCGGCATATTCATACCGTTTTGGTGGGCTGAGTGAATGCGTAGTTGGTGAGTTCGGCCAGTTTTTGGGTAATAATAAACTTTGGTTTTACCATTCTTACGTTCGAGAACCTGCCATTTTGTGAGTGCGGGTTTGCCGTATTCGTAACAGACTAACTGGCGTGGGCGATCGTCTAAATCAACCCGCATTGGTAAGTTAATCTCACCGTGATCTTGCTCGGCAATACCATCTAGTAATGCCACGTAACGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1342-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMY01000074.1 Photobacterium phosphoreum strain FS-1.2 CFSAN065480_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1341 28 100.0 32 ............................ CAAAATGCTCCAACATTGCAATTTGTTTTTAA 1281 28 100.0 33 ............................ CTGGGATCAGCTCTTTATTCGCCATAAATAGCC 1220 28 100.0 32 ............................ ACATGATTGAACTTGTAAATCGCTTCTTCATG 1160 28 100.0 32 ............................ AGGCTTAAATCATTAGCTCGTACAACATCGAG 1100 28 100.0 33 ............................ AGCATATAAATTTCCAATAACTGAATCATTAAT 1039 28 100.0 32 ............................ AGAGAGGGGCAATATTGCTTCTCTTTCAATCT 979 28 100.0 32 ............................ ATTGAGAAATTGCAGCAGGAACACATTGAACA 919 28 100.0 33 ............................ TTGCTGCACTTTACGCCCTCCCTATCGATCTAA 858 28 100.0 32 ............................ TAAATGTTCAGCCGTAAAAACACTTCCTTTAA 798 28 100.0 32 ............................ ATTCTACCCACTTGAAGAATAGTCATTTCATC 738 28 100.0 32 ............................ AGAAAATACTGATGCTTGCTATAACGCAGGCG 678 28 100.0 32 ............................ AGCCATTTTTACAGTGAATTTTGATAGTGTGC 618 28 100.0 33 ............................ ATTCAAAACAGGAGAATTTTTTAATTTTTACAA 557 28 100.0 32 ............................ TGTTTAAATTTCTCACTTGCTCGCCGCATCGG 497 28 100.0 32 ............................ AGCGGCATCAACAGTAGAAAAACCAGCATCAT 437 28 100.0 32 ............................ AGCTGTATTCCTAGATTTGTATCCTTAATTGT 377 28 100.0 32 ............................ TGCAACAGTTGAGTTAATTGGCGGCGGCCGTA 317 28 100.0 32 ............................ AATAAAATGAATTAACTTTATTTTATTGATTA 257 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTGTGCCGTGATGTACGCGGCTTGATAG # Left flank : ATTCGCCCTGCTCCCATATCAACCGAACATGGGTACTACTCTTTTCACCGCAACCGATCGCATGAAAGAAACACGCCGGCATATGTTGCCAAAACAGAAGCGAAACTTATTAAGCGTGCAATGGAAGGAAAGAATAAAAGCTTAAAAAGTGCTGAGGATGTATTTAAGCGACGTAAAGACATGTTGGAAAATATTGCAAAGAAAGATAACGACAAAAATGTTATTCATATTCGTGCAACCAGTTCAACTCAAGATCGAGGCTTCTTCCTTTATATTGACTATAAAAAGCATGATGAGTATAAGACGAACACTCCCAATAATTACGGCATGTCGAGAGCACAAGATGCTATTGCCCTACCTGTTATCTTAGACCCTTTTATTTAAGGTGTTTATAACTCATTGATTTTAAATATTGAAAGCATGATGCAGAAAATAATGGGTAAAATGACATATTTAGGATAAGGTATTGAAAATATAGTGAATTTCACAAAACACTTTCA # Right flank : GTTCAACGGTAAGCGCCTAATTAACCACACATTCTAATTACAGCCTGCTTTTGTCATAGTTTTCCGACTAAAAGGAGGAACTATGACACAATTCGAAAAACACCAATATTGGACAGCCATCGTTAACCAGCAGCAAAATAGTGGTATTTCAATACCGCAATTTTGCAAACAGAACGATATCAATTACGCCAATTTTCACTATTGGATGAAGAAAATTGAACAAACCGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //