Array 1 564742-566136 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLH01000001.1 Akkermansia muciniphila strain GP16 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 564742 31 100.0 35 ............................... CGGCAGCCTTGATATGGGTATCCCAATCCATGATA 564808 31 100.0 34 ............................... CAAATCACAGAACAAGCCGCAATCAGGCATTTCA 564873 31 100.0 34 ............................... CCGGAGAGCGGAGCGGAAGCGTTCAAACTCTTCG 564938 31 100.0 33 ............................... CTTCTGCATGTTGTGGAGAGATGTAAGAGCACT 565002 31 100.0 34 ............................... ACGGGTGCACATTTCTGACCCGCTTTGCTTGATG 565067 31 100.0 34 ............................... GGAGTATGACAATTTAGTACACCTGCACAAAAAC 565132 31 100.0 35 ............................... CCGGTTCGAAAACTTCCCTGCCTTTGGTGGCCCGG 565198 31 100.0 33 ............................... CCGTATCGGATGAAAAGGCTTCTTCCGTACCTA 565262 31 100.0 34 ............................... CCTGCAAGTGCCTTCAATGTATGCCGCGGTTCCG 565327 31 100.0 34 ............................... AACGGATTCATGGGCAGGGAGATAGATAAGCCAT 565392 31 100.0 34 ............................... CCCCTCACCCGCCGAACTGTCCGCAAAGTATGCC 565457 31 100.0 34 ............................... GCTATCTGGAATACGGAGATACGGACGGCCTAAC 565522 31 100.0 34 ............................... GCGTCGCCGGATGCGTCGCGGTAAGGCATGGAGG 565587 31 100.0 36 ............................... TCGGTATATGGAGTCTCCTGCTTTCGGCGGCCCCGC 565654 31 100.0 34 ............................... AGTCCGAACAAAACATCGTCCATCTTGCGGGCGG 565719 31 100.0 35 ............................... CTGTCCGGGCGCGCCTGGACGGGGTCGGCACGGCC 565785 31 96.8 33 ...........................G... CCTTATGAGTTTTGTGATGAGAGTAAGGGCCTG 565849 31 100.0 33 ............................... ATCCGGGTTCCCCCAAACGCCCGCATAGGGCTG 565913 31 100.0 33 ............................... CGCGTAAAAATCCCCGCGCCGCACCCACCAGGA 565977 31 100.0 34 ............................... CGGATGGGTTGCCATCCATTGCAGCCAGTCCCCA 566042 31 100.0 33 ............................... TGATAACGCGCTTGTCGATGCAGGATATGACGT 566106 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ==================================== ================== 22 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGATAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCT # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTAGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCTGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 218821-220302 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLH01000003.1 Akkermansia muciniphila strain GP16 scaf-3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 218821 36 100.0 29 .................................... CATTCCGTCCCGCGCAGGTTGCCGTTCCT 218886 36 100.0 30 .................................... TCGCCAACATGTGAGGTGGGGGGTATGAAA 218952 36 100.0 30 .................................... GGCCTTGCCCGGGTCATTGATCTCAATGTG 219018 36 100.0 30 .................................... CCAATGGCGAAACGATGAAATCCATCTGCG 219084 36 100.0 30 .................................... TAGCCAGAATCGATCTCTACCATTGTCTTT 219150 36 100.0 30 .................................... GAACAAATCAGGAACCACTACCTCTTCGCA 219216 36 100.0 30 .................................... GGCCCGCTCTCTCTTATCCTCACCGGACAT 219282 36 100.0 30 .................................... TAAATGATGCGATTATATCGTTGAAGATTA 219348 36 100.0 29 .................................... ACCTCCGAAAATAAGTTCATTGCTCTTGA 219413 36 100.0 30 .................................... CGATATTTTTCAATGGGAAAACATTTCTTT 219479 36 100.0 30 .................................... ACCGCAAGGTTGAGTTCAAATCTGCCTATC 219545 36 100.0 30 .................................... CAATACAGTTTCACAACGGAGTACGTCACG 219611 36 100.0 30 .................................... ACTCAACCTTGCGGTGCATGTCGAACTTGC 219677 36 100.0 30 .................................... CCAAGATGGGATGGGACTACAACAAGCTCT 219743 36 100.0 30 .................................... CTTAATATCCTTAGCTTCTACACCATGCTT 219809 36 100.0 29 .................................... CTATAGATATTCTTCCCCAGGGGTCATTG 219874 36 100.0 30 .................................... CGGCTTCCGGGGAGGAAAAAGAAGTCATTG 219940 36 100.0 29 .................................... TTAAACTTTAATTTGCTATCGCTGTAATA 220005 36 100.0 29 .................................... TCCCCTAATCCGGGCATCACTCCGGATTA 220070 36 100.0 30 .................................... CAATCCAGGCGAGCATGTCTTTGAATGCCG 220136 36 100.0 30 .................................... CTAGCGGGTCAGTTATGGCCCTCTCAGTCA 220202 36 100.0 29 .................................... TCCCGCATTTCCTTCCGGCTGCCTCCTGA 220267 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGTATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 292624-290387 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLH01000003.1 Akkermansia muciniphila strain GP16 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 292623 33 100.0 34 ................................. TCCAAAAGGCATTCGACGCTTTTTTCGGGGGCGA 292556 33 100.0 34 ................................. TATCGACTATGACCATCCCGCTGTTCCGTAAAAA 292489 33 100.0 34 ................................. GACGCTCACATGAGCATGATTAAAGCATTCAACT 292422 33 100.0 33 ................................. TAATAAGTTGATGGAAGTATATGATGACGCCAA 292356 33 100.0 34 ................................. GGCAAGGGATATGACATTGTACGCAAGGAATTTT 292289 33 100.0 34 ................................. GCGTGGGGAGGGCTGCACGGAGCGCGGAACAATT 292222 33 100.0 34 ................................. CCTCCCGTTGACAAGTTCCTTTTATCAATTTTTT 292155 33 100.0 33 ................................. CGATAGAGTTTCCGTAAACGAACGGAGTTTTAG 292089 33 100.0 33 ................................. CATCAACAAAATACTTTATTACCGCTTCATTCA 292023 33 100.0 33 ................................. AAGATGACCGCTGACAACTGCACTTTCGTTTTG 291957 33 100.0 34 ................................. ATCCAGTCGGAAGCTGACGGAACCGCGGCATACA 291890 33 100.0 33 ................................. ACCACGCGGGTGACGGAGAAGAATATCTGGAAG 291824 33 100.0 34 ................................. CCGTGGCCTCCCGGCATCCGTGGAATCCGTGGCT 291757 33 100.0 33 ................................. GACTACCTCAACGCACACGGTGCGGAAGGGCGC 291691 33 100.0 34 ................................. CTGAATGGGCAATCGTCTATCTGGAATACGGAGA 291624 33 100.0 33 ................................. ACCACGCGGGTGACGGAGAAGAATATCTGGAAG 291558 33 100.0 35 ................................. CCGTCTTTTGTGCAGTTTGCCTATGATGTGCAGCC 291490 33 100.0 34 ................................. CTGCATTTTATCACCCGCCCAGGTTTGAACCTGT 291423 33 100.0 33 ................................. CCGCGGCAGCCCCCTGGCCGCCGTGGAAAGATC 291357 33 100.0 33 ................................. CCCCGGAATCCATTAGGCCCTGCATCAATAATA 291291 33 100.0 33 ................................. AAAGGGGAGCAGGTTTAGGCACGGAGCCGGACT 291225 33 100.0 34 ................................. CAGATATTTCACGGCGGCTTTCAGCTTGTCAATC 291158 33 100.0 34 ................................. TTCCAGCAAAGCTTTATCCTCATTCCAAACGGCC 291091 33 100.0 34 ................................. TGTTTATGCGGGAATCGGAGAGTACACTTATTAC 291024 33 100.0 33 ................................. TTGCCCGCTGCCCCGGAGGGGTTGCCGGAGGGG 290958 33 100.0 34 ................................. GCATCCTACCCAGACTTGCACGGCTAATCTCTCC 290891 33 100.0 33 ................................. AATGCATGCGCTAATTCCCCTTGCGCCCCTTCA 290825 33 100.0 35 ................................. GCCGTACAGACCTAGGCGTTCTCAACCGTACAAAA 290757 33 100.0 34 ................................. CCTGATCCGCTCATGCTGAACACGGACGGCAACA 290690 33 100.0 36 ................................. AACCACTGTGCTAAACTTCACCATGCAGGGAAGGAA 290621 33 100.0 35 ................................. GCTTTATACTCAGCATATGGCGGAGCGGGTGGTGG 290553 33 100.0 34 ................................. CCCCTTTCCGGGCCGCTCACCCGCTCCCAGCTTG 290486 33 100.0 34 ................................. TCCCGGTCAAACACATAACAGCAGGCATGGGCCT 290419 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= ==================================== ================== 34 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGGGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGGGTACGTAACTTATCTGGAAAAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //