Array 1 289323-290815 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBE01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 78938/17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289323 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 289384 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 289445 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 289506 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 289567 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 289628 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 289689 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 289750 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 289811 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 289872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 289933 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 289994 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 290055 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 290116 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 290177 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 290238 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 290300 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 290361 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 290422 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 290483 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 290544 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 290605 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 290666 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 290727 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 290788 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306947-308911 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBE01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 78938/17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 306947 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 307008 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 307069 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 307130 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 307191 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 307252 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 307313 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 307375 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 307436 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 307497 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 307558 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 307619 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 307680 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 307741 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 307802 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 307863 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 307924 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 307985 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 308046 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 308107 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 308168 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 308230 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 308333 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 308394 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 308455 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 308516 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 308577 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 308638 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 308699 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 308760 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 308821 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 308882 29 96.6 0 A............................ | A [308908] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //