Array 1 138764-139766 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGY01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41573 SEEH1573_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138764 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 138825 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 138886 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 138947 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 139008 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 139069 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 139130 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 139190 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 139251 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 139312 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 139373 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 139434 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 139495 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 139556 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 139617 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 139678 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 139739 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156022-157685 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGY01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41573 SEEH1573_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 156022 29 100.0 31 ............................. GGGAAAATCAATAAAATCAATGATAAGCAGT 156082 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 156143 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 156204 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 156271 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 156332 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 156393 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 156454 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 156515 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 156576 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 156637 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 156698 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 156759 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 156820 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 156881 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 156942 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 157003 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 157064 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 157125 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 157186 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [157228] 157228 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 157289 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 157350 29 100.0 33 ............................. TCTGGTTATAACATCGCAGCAAAAATCAAAAGA 157412 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 157473 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 157534 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 157595 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 157656 29 96.6 0 A............................ | A [157682] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //