Array 1 3679761-3677964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMH010000001.1 Crossiella cryophila strain DSM 44230 Ga0197469_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3679760 28 100.0 33 ............................ CTGCCGGGGCCGCCGCAGGTAGGCATGCCAATG 3679699 28 100.0 32 ............................ ACGTCGCGGACGGCAGGTAGTGGTGCTGCTGG 3679639 28 100.0 33 ............................ GTACGCCAGCTCCGGAAAGAGCTGGCGGAAGTC 3679578 28 100.0 33 ............................ GGCTGGTCTGCGGCCGCGGACCTGTGGTGCGGC 3679517 28 100.0 33 ............................ CCGGTGCGGCCGTGTTCAGGCGGGATCAATGGG 3679456 28 100.0 33 ............................ CTCGCACGCGGAGCGTGCCGATCCACGCGGGGC 3679395 28 100.0 33 ............................ GCCGCGGCCGACTTCAAAATCGGCTTCACGGTG 3679334 28 100.0 33 ............................ ACAGGCGCACGCGCTGCTGGTCGCGCTGGAGGC 3679273 28 100.0 33 ............................ GGCCATCGCAGGCGCTCTGCTTGAGCGGCTGAC 3679212 28 100.0 33 ............................ CTGGGTGCTGTGCACCTACGGCCCCGAGGCCGA 3679151 28 100.0 33 ............................ GGTTGGTAGTAGAGGTGAAGGCGCGTGGGCCTC 3679090 28 100.0 33 ............................ GACGCCGCGCGGTTGCGGCGCGGTGATCACGAG 3679029 28 100.0 33 ............................ GGTGCTGACCGAGGACTGGTCGGTCAGCACCGG 3678968 28 100.0 33 ............................ CGGGACGGTGGCCTGCCGGGTGGCGGTGATCGC 3678907 28 100.0 33 ............................ CAGCCGGAGCAGCCGCATCTACCGGCCGGACTG 3678846 28 100.0 33 ............................ ATCGAGGGCGTCGTCGACGGCGGCTCCTTCAAC 3678785 28 100.0 33 ............................ GGTGTCCGGGTAGCTCCTGTCCCTGATCCGGCC 3678724 28 100.0 33 ............................ CTCCACCCGGCCGCTGACCGCCGGCGAGATCGA 3678663 28 100.0 33 ............................ CAAGGCCCTGACCAGCAGAATCAGACGTCACCA 3678602 28 100.0 33 ............................ CTCGCCGCCGACCCCGCCGACACCGAACAGCTG 3678541 28 100.0 33 ............................ CCGCGGTGACTGGGGCCAGGACGCCACCAGCCC 3678480 28 100.0 33 ............................ TCCGGTCAGCGAGTCGGCCATGCGCACCGCGCG 3678419 28 100.0 34 ............................ GCAGCGCCCGGCCCTGGCCAAGAAGCTGCGATCC 3678357 28 100.0 33 ............................ CTGACCGGCTACCACGGCAGCCTGGCCGGGCAT 3678296 28 100.0 33 ............................ CAGACCCGGACCTCCCGCTGCACGTCCCGGAGA 3678235 28 100.0 33 ............................ GGTCCCCGGCCGGGCTGCCGGGTTCGGCCAGTG 3678174 28 100.0 33 ............................ CTTGCGCAGCCCGGCGGTGAGTTCGGGGCCGTC 3678113 28 100.0 33 ............................ CTCGGACAGCGACCCGGCGGGCGTGCCTTCGCC 3678052 28 92.9 33 .........A...........G...... CTACGGTGCTGTCCTCGGCGCCCGCGACACCAG 3677991 28 85.7 0 .C...................C..C.G. | ========== ====== ====== ====== ============================ ================================== ================== 30 28 99.3 33 GTCGTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GGCGCGGATGTGGTGATGCTCTGGGACGACAACGGCCGGGCCGTTCCTGGTGGGGTCGCCTACGGGGAGGAGCTGTGACGGTGATCGTGGTCGCGGCCTGCCCGGTCGGGCTGCGCGGACATTTGACCCGGTGGTTGCTGGAGATCTCGCCGGGGGTGTTCGTCGGGCGCACGACCAGCCGGGTGCGGGAGTTGTTGTGGGTGCGGGTGGTGGAGATGGTGCGCACCGGGCGGGCGATCATGGTGCACCAGGCCGACAACGAACAGGGACTGGCGTTCCAGGTGCACGACCACAACTGGGTTCCGGTGGACTTCGAGGGCATCAACCTCATGCTCCGCCCAGCTCCCGGAACACGGTCGGTCGAGTCTGCGGGGACGGCGGGCAAGCCGGGGTGGAGTGATGCCAGCAAACGCCGACGCTTCGGACGACGGTGACCGACACCGCCAATGAAAGTGAAGGAAAACCCGACCAGCGGCCTGCAAACTCGCAGGTCAGGAAGT # Right flank : GACCACGACATCCAGTTCAGCAGTTCGGAACCTCACCGCGTGTCGGCCCGCACAACAGGTTCGGAACTGCACCCGTGGTCAACCGGCGGCTACGAGCCAGTCAGAGCACGTCCGAACTTTGTGAGGCTTGTGAACCGGCGGTGACACGGCCAGCCACGCACACACGACCTCTACCAGCAGGTGCGGAATCCGCCACAGGCAGTGCCGCGCGCCTGCCCGCTACCAGCATCCGTCCGGTAACCTATTTGGTGTGATTTCCCCATTTCAGGGAAACCTCACCATCCTGGTCGTTCAAACAGGTGTTCGAACGATCTTAGGTGGCGGCTCCGGCACGGGCCAGGCTCACGTCCCTGGTCTCCTTCGATGTCAGGTAGACCACCAGGCTGACCAGGCACAACGCTGCGATGTACCAAGGGTACAGGGCGCCGGAACCGGCCGCGGTCAGCTGTTCGACGACGTAGGGCGCGGTGCCGCCGAACAACGCCACGGTCAGCGAGTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3690604-3688943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMH010000001.1 Crossiella cryophila strain DSM 44230 Ga0197469_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3690603 29 100.0 32 ............................. GAGTGGGAACGCGCCAAAGTTTTCCGGTACCG 3690542 29 100.0 32 ............................. TGTCGCGAGCAGCTGAGGCCGCACGCGCGGAA 3690481 29 100.0 31 ............................. AGGTTGCCGTAGTGCAGGTCGCAGTGCGCGG 3690421 29 96.6 32 ............................G GCGGAGGAGAACCTGCGCCGCCGGTTCCCGGA 3690360 29 96.6 32 ............................G GTCGCCGGTCGGCCGGTGCTTGTTCGCCAACC 3690299 29 96.6 32 ............................G CAGCTCTCCCCGGCGGCCAGACAGGTCGCCGT 3690238 29 96.6 32 .C........................... GTCACGGTGACCACGGCTTGCACTGTCTCGGA 3690177 29 100.0 32 ............................. AAGTACGAGGATGAGCTGATCAAGGCTAACCC 3690116 29 93.1 32 A...........................G ACTGGGAGGAAGACGTCCTCCAGCGAGTCGAC 3690055 29 93.1 32 ...........A................G ATCGGCGCTGTGTCGATGACCGATCCGAAGTC 3689994 29 100.0 32 ............................. CCGGAACGCGTCGGGGTTCGCAGGCTTCAGCC 3689933 29 93.1 32 ...........A................A ACGTCCCCGGGGGAGGCGGACGATGATGAGGA 3689872 29 93.1 32 ...........A........A........ GAGATGAGGGACAGGGCTAGGGCGCCGAGCGT 3689811 29 96.6 32 ..................A.......... GCCGCCGCGCCCTGGCTGTCGACGGCCGAGCC 3689750 29 96.6 32 ............T................ AGCAACGAGGTCCAGACGGTCACCATCACTGG 3689689 29 86.2 18 ...........A......A..A......G ATCCGGCAGCACTGAGCC Deletion [3689643] 3689642 29 86.2 34 .............AC......T..T.... GCGCACGTACCCGGGCAGGACAGCGACGCCGAGC 3689579 29 89.7 32 .............AC......T....... CCGGTGCCGGGGTTGAGGTTGAGGTACGGGTT 3689518 29 89.7 32 .............AC......T....... TGTGCGTCTTGGTGGTACAGCCGTTCCTGCGC 3689457 29 93.1 32 ..................A.........G GGCTACAGCACGCTGCGGGTCCTGCTCGTGGT 3689397 29 93.1 32 ...A..............A.......... TCCTGGGCATCGGCAACGGTCGTGGCGACCTC 3689336 29 93.1 32 ...A........................G GCGGTCGGAGCAGGTCTTCTGCCCGAGATCGT 3689275 29 93.1 32 .............A..............G GCGGTTGGTGGTGAACCCCCGCGTTCCGGCCA 3689214 28 93.1 32 ...............A.-........... AGCAGGGTGATGCCGACCTTGCGGGCCTTCAT 3689154 29 79.3 33 .............AC..A...T...C..G TTCCATGGTGACCTGCTCGCCGCCGTCCGCGCC 3689092 29 86.2 32 ........A....AC......T....... GGCCCAGGAGATCCGCGTCCTCTGTGAAGCGG 3689031 28 93.1 32 .............A...-........... TCCTCTTCGTCCAGGGTCCAGATCACGCCCTT 3688971 29 89.7 0 ...................A.T......G | ========== ====== ====== ====== ============================= ================================== ================== 28 29 93.5 32 GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GCCGACTGCTCCTGATCATCACCGATGCCCGTCTAGATGAGCACCTACCGGCCGCCGCGGCCGAGGTCGCCAAACTCGACGAGGACGTGCTGGTGCTGGCCGTCGGTCTCGCCGAGGCCGACCACGAACTGCTCAGCGAGGTCGTGCCTGCCGTCGTGGCGGTGCCGCCGGAGCAACCGGAACTGTTGCCGCACCTGGTGCGGCAGGTCCTGGAAGACGTAGTCCGCCAGGACCGGGTTCTCGGCTAGCGGTTGCGGGTGAGGTGCGCGTAGAGCTGGTGCACCCCTGGGTGTTGCCGGGCCAGTTGGCCCGGCAACACCCACCCTCATGCCGTGCCTTCCGTCGGCCACCTCTGCAAGCTCCTGCTCGTCGACCGCGCTTAAGGTTCGCTTGGTCCGAGCAGCAGAGCCGCGATGCGGCCGCGACGTCGCGTGAATCGGCCCGGAACGAAACCGATGCTGAAATGGGTCCGGGCGCGGTATCGTCCCTGGTCAAGAAGT # Right flank : AACGGCCGCGGCTTGCTGGATGTGATGACCGGTCCGGCGATCCGCCCATGACCCATTGCCAGGCGACCTGCCTTCTGCCCTTCCGCGCGGGCAGTACCACCGTCAGCACTGCGGCGCAGGGAAACGCGTCGGTAGCAGCTGATCGTGCGAATCGCGGCTGCCGCCGCTAACGACAAAGCGTGTTCCGTCTACACACAAGCGTGTCCCAATCCCTCCGGCCCACCAACGACCACGCCGCACCCGCCGATGCCAAATTGCTTGCGGTATGGGCAAAATCCGTCCGCGACGAGCACGGCGCCTTGACCCACTGGCTCCCACTGCACCAGCACCTCGACGACACCGGCGCGGTAGCCCGACGTCTGCTGGAGAGCTGGGTGCCCCGCCAGGTCCTCGACACCGTGGCGCGGGATGTCCGGGGCGATCTCGACGAGGTGCGGGTGCTGCTGGAGTGGCTGACCCGCGTGCACGATGTCGGCAAGGCCAGTCCCGCCTTCGCGGTG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //