Array 1 32182-33064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000028.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32182 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 32243 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 32304 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 32365 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 32426 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 32487 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 32548 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 32609 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 32670 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 32731 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 32792 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 32853 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 32914 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 32975 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 33036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : ATCGGGCAGCTCAACGCGGCTATGAAAATCACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 812-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000034.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 811 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 750 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 689 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 628 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 567 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 506 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 445 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 384 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 323 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 262 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 201 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 140 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGTTGAAACCAGCATTCCTTATGCTGTGCTGCCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000068.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 108 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 169 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 230 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 291 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 352 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 413 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGGGGTGTACCACGGCATGATGACGGCCAGCCATG # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000053.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 62 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 123 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 184 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 245 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 306 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 367 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 489 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 375-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000073.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 374 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 313 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 252 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 191 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 88 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ========================================================================== ================== 6 29 98.3 41 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000076.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 62 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 124 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 185 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 246 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 307 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 368 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000079.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 62 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 123 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 184 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 245 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 306 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 367 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 428 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 489 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 550 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 611 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 672 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 733 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 794 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 855 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 916 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 977 27 89.7 0 .....T.....................-- | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUQ01000084.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30663 N30663_contig_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 62 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 123 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 184 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //