Array 1 65306-63752 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLLU01000015.1 Escherichia coli strain MOD1-EC5551 MOD1-EC5551_15_length_139549_cov_61.4982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65305 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 65244 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 65183 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 65122 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 65061 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 65000 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 64939 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 64878 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64817 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 64756 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64695 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64634 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 64573 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCTGTCGGCAG 64512 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64451 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64390 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64329 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64268 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64207 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64146 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64085 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64024 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63963 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 63902 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63841 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91767-91006 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLLU01000015.1 Escherichia coli strain MOD1-EC5551 MOD1-EC5551_15_length_139549_cov_61.4982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91766 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 91705 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 91644 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 91583 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 91522 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 91461 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 91400 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 91339 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 91278 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 91217 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 91156 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91095 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91034 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //