Array 1 1437-1791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000102.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1437 29 100.0 36 ............................. AATTAATGTTAACGTCGCATAATCATGTTATTATGC 1502 29 100.0 37 ............................. TTGTTTGTGTTCCAAAGATATATTAATCCAGCTGACA 1568 29 100.0 36 ............................. TTTCCTATCTCATTTGCAAAACTATTTATAGATTTG 1633 29 100.0 36 ............................. AACATTGTTGAAGTTTTTGTCATTGCAGTTTCAAAT 1698 29 100.0 36 ............................. TGAGCCATTAAGTTATAACTTTCTTCTGCTGTCATT 1763 29 79.3 0 ......T..C......G....T.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AGATACAAGGTGAGAAGAAGAATTATCATGTAGTATATAAGATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTAGTTTATTTTTGAGGGGGATTGATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAATCAGAAGAAAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTCTGTTGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAACATATGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTATATATGTGTAGGTATTGAAAATGCTAAGTCTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTAATGAAAGAATGTGATTATAATGTAAAAAGTAATAAATAGGTAAAATATGTAAGAATTATGTGTTATAATATTTTTAGCAAGAAGATGCAACCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGTGATATATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTACTATAATAGTTTGCTTAACTAGTAAATTAATTATAGTCAAAAAAACAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTATGCTTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAATAAAAAAAATTTAACATTAATTATTGTAAGTTTTGACATTAATTAATGTTAAAATTTATAAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 54102-53417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000104.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54101 29 100.0 36 ............................. TTTCTTTAGACCACATTTTTTCATTATAGTAGTATT 54036 29 100.0 37 ............................. CTGTACAAGCTTTCAAAACTGTTTAAATTTATAACTC 53970 29 100.0 37 ............................. CGTGCTGAACTTAAAATAATGATGCTATTTTGGGACA 53904 29 100.0 36 ............................. CCTTTAAAAAATTTTTCGTCTGCATGTAAAAATAGC 53839 29 100.0 37 ............................. ACTATCTAGCTATAGTAAGTAACAGTAATCTTTTACT 53773 29 100.0 38 ............................. TAGTAAAAGTATTTCTATCAACATTATTTCCAAACCCT 53706 29 100.0 36 ............................. GAAGATGTTAAATATGATGACTATATTCTTCAAAGA 53641 29 100.0 37 ............................. TCTAGTATGTCTTGTACTGATGCCAAGTCATCATTAG 53575 29 100.0 36 ............................. AATGACCAGTACAAATGCGAGGTTGGCGATGATAAA 53510 29 100.0 36 ............................. CTTACTGCATCAAAACTATCATTCTCAGTTATGTTA 53445 29 72.4 0 .............CGTA.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAAGGTTAGAAAAATACTTAGAAAATATTTGACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGTGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCATATGATAACTGTTATCAATTGCACTACTACTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGAATGCAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAATATGACAAAAATCAATACAAAAATGGGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGGAAAATAGCTATAATGCCGTTAAAAATGAATATATACCTATATCAGATACATTTGTGTATAATGATGGAGAGGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAACCCAAACTACCAAAACTTAGGTATAGGAGGTAAATTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTATTCTACAATAAAAAAGGTTTTAATATATTAAAAGAGCAAATAAATGAGGACTCAGGATTTAAAGAATATATAATGGAATATAGTAAATAATATGAGCTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 34938-35164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000002.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 34938 29 100.0 37 ............................. ACAAATGAATCTGCAAATATAGTTGTACTACTTAATG 35004 29 100.0 38 ............................. AGATATTTCAAGCTCTTTTGCACTTTGAGATAAGTTAC 35071 29 100.0 36 ............................. ACTTTTCTAATTTTTTTATATTTCTTTCTAGAGTAG 35136 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GACAAAACCATTTTTTAGGTTTAATTGACAGTCAGTTTTTTTATGTAAATAATATTTTGCTTAAATTGTCAGAAGTCTTTTTATCCGTTTCTTCTAAATGAGAATACCTATACATAGTTATTTTTATTTAAGATAACTTTTTGTTGTGCGTATATGTTTTACAGAAAAGAAGATAATTATAATTATATTAAATATTTTAGAAACCTAAAAAGAAAAAGGTATTATTGGAATAGAGAGTATAGTTAAGCATTTACAAACATATAGATGCTCTTACTTTGCTAAATTATCCCATTTTTATTTTATAATGTGAGTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATTTTTGAGATAAAGTAGGGCATAACAGTTGAAATATAAAGCTTTGAGAGCATATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGGATGGTATATGTATAAGCGTTGGAAATACTCAATTTATTTTGGG # Right flank : TGTTTTACTGCTGGATAATAGAAGTTTCTTCTCATTGAATAAAGATTTAATCACTTTATATTTATCTTAATTCTGGGATAGTTTAATTATTATTCTCTAGTTGTAATTTGTGTTTCATGATTTTAAAATTTTCAATTCCAATTTTATCTCGTCTAATTGAGTTAACTTACCTTTTTGATTTTCTAATCAATCCATTTTTCTTTATATTTAAGAATCCATATTCTAATTTTATTGTATAGAACAAAATGTTTTTCTGCTATTAAATTAAACTCTTTAGAAAAATGTAATTCAACTGTTTTGATTTTTTATTCTAATGATACCTTAATTTTGGACATAATAAAACTCTACTAGAGTTAGATAGTTTTACATATTTTAACTGTATCTTAAAGGGATATAATTCAATAAAAGGAGTGCTTTTGAACAAACTTTTTTTATCTTTTTTATCTTCTACAGATTTAAGTATATCACCTGTCTGGCACTATAGAGCTTTGCAAATTTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6856-7412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000049.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6856 29 100.0 37 ............................. GTTGCTGTTGCTATTGTCTTTGCTAATTCTTGCATCT 6922 29 100.0 37 ............................. TCTAATAAAAACCCTATGTTGGTTGTCATTTCTGCTT 6988 29 100.0 36 ............................. CTTGCATATCGAGGTCAAGGAATTTTAGTGATGACC 7053 29 100.0 38 ............................. CTGACTCATTTTTTGATGTTAGTGGTAGCAAAAATTAT 7120 29 100.0 38 ............................. TATGAACTAGAAGATTCAGATATTTTATCTGATAATTC 7187 29 100.0 36 ............................. ATTTCTGACAATGAAATAGATAGGTGTATAGAAGAA 7252 29 100.0 37 ............................. TTTTCATTTTGCAATGATACATTAGCGAGCAATGAAA 7318 29 100.0 37 ............................. CAGGAGAAGCAAATGCCGAAATAAATGGATTTGGCGA 7384 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.6 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATGAAGTACACATAGCATATGGATTCCACGATTTAAAGGGTGCAGAGCTACAAAATAGTTATGGAGTTATGAGATAAGCTCAATTATTAAAAGTAATGCTTACATCAGAAAAATATGTAAGCATTATATATTATAATCATTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTATCATATAAACGCCAAAATAAATAATTTTTAAATTATACTCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATTTCCTTGTTTTTATTATATAATAAATTTGTATAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATTTTTCTAGTAAAGTATGGTTTAACAGTTGAAATATAAGGAATTGAGAGCATATGATAAGTGTTATCAGTTGCACTATTGACCGCTCACTGCAAATTTTAGAGAGTTGTATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTTTATTATTAAAAGTAACATATTTATTATTAGCTTTATCTACTCTTTTAATAATAATTTATTTAAAATAGATTTCATATAAGAGTTATAGAAAAGATACTGTATAAATTCTTACTTTTTAGAGAAATAAATCTAAAAATAACAGAAAGTAAAAAAGAAATATATTTTGATGAGTTTTTTAGCAACAGTTTATTTTAAATTGTAGATAAAACTAAAAAGGGTTCTCTAGAAAACAAAATCTATCTAATTATACTTACTTACCAATACCATCACTTGATGTAAGCAAGATTCTACCACATTTTCTCCGTACTCCAGTATAAAATCATCTAATTGTGTATCTATAAAATCACAATAATCATATGAACTACCGATATAAGCAGTCAACATATGTGTACATCTATCCATTTTATCTCTAAACATATATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAATACATCTTTTTGGCAACTGGCTGACATAACTCATAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 37003-37425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000062.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 37003 29 100.0 37 ............................. GTGTTAATATAACTTTTCCCATCTTTCTCACCAAACT 37069 29 100.0 37 ............................. TGTATAGCTTCATATGTATTTATACACTCAACATTAA 37135 29 100.0 37 ............................. TTTGACAAAACGTATGGTTTAAATAAATCAGCTTAAG 37201 29 100.0 37 ............................. ATAACAACACATATTAAAATACATACTCCCCAAAAAA 37267 29 100.0 36 ............................. AATACAATGCCACTTCTCCCCTTGTCATTTATAATA 37332 29 93.1 37 ...............A.......A..... AAAGTTTATAGGAGTGTCAACACCAGTAGTATCTAAA 37398 28 82.8 0 ......C...........-.A..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTCATTTAATCTAAAATGTGAGAATATCTATTTATATCTATTTTTAATAACTGTATGTCCTAATCTTTCAGAAATTATTTTTATGTTGGTTACAGTTAGAAGAAGTAAGCTTGCATTTGCATGTCTTAATTCATGTATCTTTATACATAGAAGGTTATTAGTTTCTAATAGTTTTTTAAAGAATATATTTATTTTATTAAATTTGCTTGTTTAAGTTAACTCATTTTAATATAAATAATTATTTTTTTGTAAATTAAAGTGTATTTATTTTTATTAAATTATAAATTTACATAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAGAAACTTTGCAGTGTTCGTTTTTTTTGGAAAATTGTTTGTAGTTATTGAAATTACTGTTTTATAGAGGTTTTTTATAAAGTATCAAAAAACACTACTGGTCGCTCACTGCAATTTTAAGAGAATTATGTGATTTAAGGTATTGAAAATGCTCAATTTATTTTGGG # Right flank : ATCGAAACCACTAAATAACACTTACTCAAATAGTAGGTGTTTTTTTATACAAAAACTTAAGAAAGGAGAGTAATAATATGGCAATAATACAAACAGCTATTCGAATTTTCGATGGAATTAAATTTTAAATATAAATATACATTAGGAATTGTTAATAGTAGTGAAAATACCTACTAAAGTGAAGATACTTATCTTTATGCTAATACAAAGAAGCTTAAAGCTTTTATCAGAATTAAAGAATCTAAAAGTATTATAAATAGTAAAACTTCTAATTTAGATACGAAGCTAGAGGAATTAAATAATGAACTGTTAAATGCTATATAAAATATCTAAAAGAATTAAAAAAGAGTGCAAAAGCACTCCAATTGTGAGAAATATATACATAAAATCATTATTACAACAATGAAAAATGTACATATTAAGAGACATTTTGTATTTTTTTATGATAACACTTAATTTAAAATAAATGTTTATCATAGCAATAAAAAAGAAAAAGGGAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11136-10779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWB010000087.1 Clostridioides sp. ES-S-0171-01 CD-ESS017101gDNAQiagen-xx-EN-USA-2019-093-JS_208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 11135 29 96.6 37 ....................T........ TTTAGATAGTATAAATTCTTTTTAATAATTATTTTAA 11069 29 96.6 36 ....................T........ GTCTAATTCTTCTACTAAATCTATCTATTTGACTAA 11004 29 100.0 37 ............................. TGTGTCATAGATATAAGATTATTTAATACTGCTGTAG 10938 29 100.0 36 ............................. TCTATTTCATCATAAGCATTTACGTTTTCTAGAACA 10873 29 82.8 37 ......T........AG...T.......G ATTAATGACTTTAGGAGTAAGCAGAGCTAATGTGACA 10807 29 79.3 0 A.....T.........G....C.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.5 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TTATCATGTAGTATACAAGATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGATAGTTTACTTAATGAGTACAATTTAAAAACTGATAAGGATATAGAGTATTTTGTGAAATTTGCTAATGCGTTATATGAACTAAAACAAAATAGCGAAGAAAAATTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAATAAGTAAATAGAATAGATAAAGCACTTGGATATTCTATTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAAATAAGGGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGCTATCAATTGCACTATTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAGGTACTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTAAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACGGATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGGATTTTTTTAAAAAAATAGCTAAAACTATTTTGTTTCTATTTTTTAATATATGTTTATTTATGTTTACTATAGTTGGAATTTTAGCGATTCAACAAAAAAATATTCCAGCAAGCTTGATTTGTTTTTCAATTGTAGTAATTATACTATTATTATGTTATGGAAAAAAAATAAAACAAATTTCAGTACTAAAGATAAAGGAAAATACTAAGAAAGATGTGAATTTTGACAGTGAGAACTTTCAAAAACAAAATATACTAAATAAAAAAATTAATATTCTAGAACGGAAAGAAGAAAAACAAAAAATGCCTATAGGCTGTATAGTTATCATTTTATTCGCTATTTTACTTATATCTTTAACTCTTTATACTTTT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : GTTTTAGATTAACTATATGGTATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //