Array 1 90662-91350 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFP01000005.1 Salinivibrio proteolyticus strain DSM 19052 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90662 28 100.0 32 ............................ TTCATCCCGTCCCCCTTACTTTTTCTGGTAGA 90722 28 100.0 32 ............................ TCAACTTCTTACGATAAAGGTCTAGGCTTGAG 90782 28 100.0 32 ............................ TACCGAGATTATTGACGTTCGCATTTCTACCG 90842 28 100.0 33 ............................ ACGCATCCATGCGTGGCTTATTTCGGTACTGCG 90903 28 100.0 32 ............................ TCCAAGTTTAGAGAACATGTTAGCGATTGCCT 90963 28 100.0 32 ............................ CAGCAGTCCCACAAGGACGAATGCGACATCAA 91023 28 100.0 32 ............................ AGCGGTTAACGGCACATGGCCAGCGCTGATTA 91083 28 100.0 32 ............................ GTCGAGTCACCGGGATTATCTTGCTCGCCATT 91143 28 100.0 32 ............................ AACATCAAGAAAGAGCCGGTCAAAATGGGCGA 91203 28 100.0 32 ............................ TTCAATCAGCACATTGATAGGGCCGATTTTTT 91263 28 100.0 32 ............................ TCCCTCAACAAGTACAGCGAATGACTTTTCAG 91323 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTTTATCTACGATTAGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTGCGGCCCACAGACGCTGAACGAAGCGCTTTATGCTTGGTTTTACGCCCGTTTGTACGTTCTCGCCATACTTTAAAGCTGCGCGGCTTTAACTCACGGCGCATTAGTGCAATAACATCGTCTTGCCGCAGACCATATAGTGTTGCAATCGCCTCAAAAGGAGTTCGATCTTCCCACGCCATTTCAATAATCCGGTCTAAGTCATCCGGCTCGGTCAGTTGCATTCGCTCCTCCTCGCAGTAGAGCGATAGATACGGATAAGTCGAGCCACGTGGATCAATAAGTGGGGGTGCCTAAACCCCTTGTAACCCTTATTTTTGGGCTATTTAAAAATAAACAATAAATACAGCTAGTTACGAAAGGCTCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCCAACGGCCTGTTGTACCTGATGATTGTTACGTTATTCTATA # Right flank : AGGATTGAATGWGAACTCTTGTGTGCTGCTATATACCTAACGTTGTTCGGCTGAATCAATATGAGTGAAAAAGTTGGGAGTCACTTACAAAAAGCGCTATATTCATTATTCACATTTATGAATAAGTGCGATAGTTATGGCAACAACAAGTTTAAGTTTAGGGGAGCACTGGGAAGTGTTTATTAAAAACGAGGTAGCAAGTGGCCGTTACGGCTCTGCTAGCGAGGTTGTTCGTGATGCATTACGCACGCTTGAGGAACGCAAAACCAAACTGGATGTGTTGCGCTCACATCTYGATGAGGGGGCTCGACAGGCAGCAAGTGACACGTTTGTCGATGATTTTTCAATGGATGAACTGATTAACGACTTGGACGCAGAATCTTGACGGCGAGCCAAACAAAAAAGCAGGTTCGTATTACGCCCAGATCGCGTGATGATCTTAAAAATATTGGTCGTTATACTGAGCGGAAATGGGGAAAGGCGCAGCGTAACACTTATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 100809-101196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFP01000005.1 Salinivibrio proteolyticus strain DSM 19052 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100809 28 100.0 32 ............................ TGCCAGTGATTCACCAGGGCGACGCTTAATCG 100869 28 100.0 32 ............................ ATATCAAGATTAAACGTATCACCGGGCAAGGC 100929 28 100.0 32 ............................ TAACAGCGTATGAAAACAAACCTTCTCATTAT 100989 28 100.0 32 ............................ TTGGTAATCAGGTAAACCTGTACATCTTGGAA 101049 28 100.0 32 ............................ AATAAGCCGGAATCGGCACAACCCGAAAGGAC 101109 28 100.0 32 ............................ TCTACAAAAGTGTAAATCTTTGAGCCATGTGT 101169 28 85.7 0 ...........T.............GTG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGTGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGAACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCGGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGACCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAATCTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTTAGCTCTTTAAAAATAAATAGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTACCTGACGATTGTTACGTTATTCTATA # Right flank : GTGTCAATACGGAACCCCCTTAAATGGTTGACCTATATTCATTTTTTAACCATGTAAACCGTGTTAAATTACTGAGTTGTACGAAGGAGTAGCCATACTTTGCCTAGCTTGTCGCCTGACAAAATGGAGTGTTGGAATGCGAAGAAAAACGAAGCGCAAAGACTTTGCAGCGCTTAATGAAGAGTTAGTCTCTCTGAAGCAGAAAGCGCAAAAGAGTGGTGATAATCGCTGGGAAAGCTACGAGTGCCRGCTTGTCACTCCCCTGTATGGCGGAGGTGTGCTCGCTGGAGAGATTGATCAAACCATGCCTATTCGCGCAAGTGCGATTCGTGGTCATTTGCGCTTTTGGTGGCGTATCGCATGTGGTCCGGACAATCCTAAAGAACTGCGCAGTGCAGAAGAGGCCATTTGGGGTGGTATTGGTGACCATGGAGCAAAGGCGAGCAAGGTGAGTATTTATGTTGACTGCCCAAAAAGTCGGTTAGAGACAATACCAACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 109278-110025 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFP01000005.1 Salinivibrio proteolyticus strain DSM 19052 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 109278 28 100.0 32 ............................ GACACGAAAGCTATTGCTCAAAACATCAAAAA 109338 28 100.0 32 ............................ GAAAGAGATAAGCAATACATTCATTTCGATTC 109398 28 100.0 32 ............................ ATTTGTTCATGACCCCAAGGTTCAGCAAAACT 109458 28 100.0 32 ............................ TTCATGGATTGGCATAGTGTTTTCCTCTGTTA 109518 28 100.0 32 ............................ GTGCTCATCAGGTTATGGCCAGTGCGCTGCTG 109578 28 100.0 32 ............................ TGCAACAGAAGTTAGCGTGTCGCTGTGACCAT 109638 28 100.0 32 ............................ TGAACTTGAGGAGGCAGCTGAGCAGTAAGCTG 109698 28 100.0 32 ............................ GAGCGATGAAGTTTCGTCAGTGCTTGAGGTCT 109758 28 100.0 32 ............................ TTGAGCGTAAATTTCCTTGWTAAGTACAGCTT 109818 28 100.0 32 ............................ ACTTTGCAACACACCAAGCAACACCTGATTAT 109878 28 100.0 32 ............................ AGTCCTCGCCATGCTCGGCTTTGGCGCGTTCC 109938 28 100.0 32 ............................ GATTTGAGCGATATCACCGAACTGAGTAAGAC 109998 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGTCTTGGGGTTCGTCGCTCATAACGTTTTACCTTACCAAGTTTAACTTCTTCAGATGCAATCAGCGCCTCTTGCACAAAGCTGTAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCGATTTTTGCCCAGTACTCAATTTGCTTGGGCACAGAGCGCATTTCAGCCTCTGCATGCACTTTTACATCTGACACAAACTCATCATCTAACCGTACACTGGTTGGCATGATTCACTACCTCGTTTATAAATCTTCACTGGTTAATATGCGACAAAATGTCGCGCCTTGCAACATGTTTAGAACTGGCACATTTGGCGTGACTTAAGACGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGACGTTCAAAAATAAACAATAAATACAAAGTGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAAGTTATTCTATA # Right flank : GATACAAGCGCCGCTACGGTGTTGGACATATAAAAACTGTCAATGGGCGCCTGTCACGATTAGCGCTTATATCAACCGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTTAACAATGAATACGTTGTAATTTCTTAAAGAACAACTAATATGTTGTATTCGAGCCATAATACAATATTAAAGTTGTTTGGGGGTGTGATGGTGTCACTAAAAGATATAGCGCGCGCATTGCAAGCCCGTCGCAAATCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTATCAGCGAGTAGAGGCAGGGAGTGATGTTCGGTTATCGACTTTGCTGCGCGTGCTTGAAGGGCTCGACCTGACATTAACGCTCGAGCCCAAAGCATCTCAGATGGTTGATGAGTCGGTAAACCTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCATAGCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 111949-112096 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFP01000005.1 Salinivibrio proteolyticus strain DSM 19052 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111949 28 96.4 32 .............C.............. GCACCAATCAGGCTCCATCGGATAGGTTTTTT 112009 28 100.0 32 ............................ ATCATCGAGTCGCGGCGTTTCGGATTGCTGCT 112069 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGGACGATCTGTTACCCCGATCGCATGTTGCCGCGTCTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCATTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTCACCATCGGTTCATGAGCCAATCTAACGGAGAGCTAATCGGCACCTTCTTCCCCTTTTTTTTTAGCCACTTAAAAATAAACAATAAATACAGCTAGTTACGGAATCCCTTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGATTATTACGTTATTCTATT # Right flank : AAGAAGGGAATGAGTTGTTTGCTGAACCATCTGGTTCACTGCCGCATTGGTAGTGGAGCGAGTATTGTGAATGGTTCGTTCATTAGTGAGGGTGTCTTGCTTTTCTATAAAATGACCAACTAACTAWACTTTTTCGTGGCTGGGTATGTAGCTCGACGTTTATCGTTAGATTTATTTCTATTGAGTAATCAAAAAGTAACTCGTGGCGTGATTGTCRTTGCCCAGATTCTTTCAATTGATGCAGAGATTCTCTTCTACGCTAACACAGTAAAGATGTTTTTACGGATGTTGAGTGCTAGGAGTGGGGTATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGTGCAGGAATTGTCGTTAGTTTTGTCACGATCATCCAACTAAATGGGCTGATGAATAAAGTTGATGAAATGGCACAAGTTCGATATGCCTCTTATCAAACAGCTGATGAATTAAGGCAAAGCTCTGATGATTTAACCCGTCTAGGTCGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //