Array 1 911397-912522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079837.1 Salmonella enterica subsp. salamae strain LHICA_SA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 911397 29 100.0 32 ............................. TAGGAGCGGATACGGTAAAATATAAATTTGTC 911458 29 100.0 32 ............................. CCACCACTTCCGAGGGCGTTTCCGTTGTTATC 911519 29 100.0 32 ............................. ACCGATTATTCTGATAACCTTCATAGATGGGA 911580 29 100.0 32 ............................. TAAAAAACTGACAAAGCGAGTCCGGTCAATCG 911641 29 96.6 32 ............................T TATGACCCTGTAGAATTTTAGCCGGAGAAGCC 911702 29 100.0 32 ............................. TCTACTATTGTCCCATTATTTAGAGTAATTAA 911763 29 100.0 32 ............................. AGGTTGATTTCCTGAATCACAAATCAGCACAG 911824 29 100.0 32 ............................. CAATTATTTCCAAAATCGCCACGCTACAGCAC 911885 29 100.0 32 ............................. ATAGCGGTGAATATGAGTGGGCTAAATTTTTT 911946 29 100.0 32 ............................. CTGTCGACTGCTGGGGATTGGTCGCGCTCTAT 912007 29 100.0 32 ............................. GCGACATTATCTTTGCGTGGTCATAATATTGA 912068 29 100.0 32 ............................. ACAGATCCAGATCAAAAAGAATTATTTGATAA 912129 29 100.0 32 ............................. ACAATCTCGTCGCCGTCCTGCATCAGGTACAC 912190 29 100.0 32 ............................. TTAGAAACCCCTTTTGTTGCCACTACTGGCGG 912251 29 100.0 32 ............................. ATCCTTACACGCTACCAAATGGAAGGCAAATC 912312 29 96.6 32 ............T................ CCGGCAACGACTGATTACGCCAAAACAGGGCA 912373 29 93.1 32 ...........C..G.............. TGGGTTTGTGCTGCAACGATGTAGTCGACGAC 912434 29 96.6 32 ...........C................. ACCTCAATATCTGATGCAGAGTATGATCGTTC 912495 28 89.7 0 .............C.........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGACATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTATTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCTGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGTGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAACAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTTCTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGCCCCGGACTTCCTGACCTGATGAAGAGGAAACTGCCTGTGGCTCAGACGACTGTCCCACTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAATCAGAAAGCTGAGTTTTTTGAGTCGGTTATCAACGTTCTGAAAAATGATTACGGGGTGAGTGTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 923491-923947 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079837.1 Salmonella enterica subsp. salamae strain LHICA_SA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 923491 29 100.0 32 ............................. AAATTCAGCAAAGAAGAACTTGTAAAGGCGAC 923552 29 100.0 32 ............................. GTTCTCCGCACCAGATTCCAGTACGTAGGCGA 923613 29 100.0 32 ............................. GTGTTGCAGAAGGAGCTGATTGGTACTGACGA 923674 29 100.0 32 ............................. ATGCGATGGGGAATATTGTTAAAGTGGTTTAC 923735 29 96.6 33 ............................A GTCGACCTATGGCCTGTCAGAGCGTGTTTTCAT 923797 29 100.0 32 ............................. TAACGTACTGAGTGCCGTTCGTGGCGGCGGTG 923858 29 100.0 32 ............................. GTCAACAGGCGCGACCTAATGACAGCGCTGGA 923919 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATAAGTGATGGTCTGGAATTATCGGCGAACAGGGCGCGATAAGCTGCTGCCAGGCGCTTATACATGGCGTTTGCGGTCGCCATTGTCGGCAGTCCAACGTAGAGCCCGTGCCCTTTATTGGTCGACATTAAACGGTGTGTCAGGATCAATGCCGCTTCCGTTTTACCTGCTCCGGTAACGTCCTCCAGGATGACCAAATGCGGTCCATGCGCTGAGATATCCAGCGTGTTTGCCAGTTGCTGGAGTGGAGTGAGGGTCTCAATGAACGGAAAGAGTGCCTGATGGCTTTGATAATGGCTATGTTGCGATAATGGCGGAATTGTTGAGATAGCCCGCTGGGCTTTTTCACAGGCGAGGGGCCAATAATCTTTCAATGGCATGGTGCTGCTGAGCAGTGGAAACTGGCTTTCATCCGAGCCCATCCAGTCGGCGAGGGTGACAAGCCCAGCGAAAAACCAACTGTGCTGTTTTAAACATTTTCTACCTGCTTTGGTTTTC # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2049723-2050669 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079837.1 Salmonella enterica subsp. salamae strain LHICA_SA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2049723 29 100.0 32 ............................. ACTCTAAACAGCGTTCAGGCGTTAAATTCTGT 2049784 29 100.0 32 ............................. CGCACCGGCTGCATGTTCTGCGGATTCGGTGT 2049845 29 100.0 32 ............................. TCAAACCCCGTCCAATCGTACTGTTTACCAAC 2049906 29 100.0 32 ............................. GAAATTTTAATCACCGGCGATCAGGCGGCGCG 2049967 29 100.0 32 ............................. CGGTTTATTAACGCAAACAAAAGAATGGCTGA 2050028 29 100.0 35 ............................. CCGCACTTCGTGAGGCAACAGGGGGGGGGGGTGAT 2050092 29 100.0 32 ............................. CGAGGTCTGAGGGGAAATATAAGGGGCGCACC 2050153 29 100.0 32 ............................. GACGGAGCATACTTGGTTACTCGCACTTATAG 2050214 29 100.0 32 ............................. TTCATCCATACGCTCACTGAATCCACGCTTCC 2050275 29 100.0 32 ............................. TTTTAATTAAAATCTCAACCTGTGCTTTATAT 2050336 29 100.0 32 ............................. TGACACCTTTCGTTTTATAGGTAAGGAAGCAT 2050397 29 100.0 32 ............................. CGGTCTTCGACACCTTTTATGGCATCGTCCCA 2050458 29 100.0 32 ............................. CTGCGCCGTCTGGCAGTTCGTCTACGGAATCG 2050519 29 100.0 32 ............................. ATGCTCGCGTTTGCCACCAACAGACAACACAA 2050580 29 100.0 32 ............................. TTTTTAAAACGCTTATAGCAAATATAACGCCC 2050641 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 16 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCGCTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCTCTTGATGTGATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATGATATGAAATCAATTGGTTATATGTTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAATGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //