Array 1 70997-71925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVY010000040.1 Aggregatibacter actinomycetemcomitans strain Gm1168 590, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70997 28 100.0 32 ............................ ATCATCACGAATTTTCTCACCGATATCCGGAA 71057 28 100.0 32 ............................ CCGCGCTGGCAATCCGCGATGAACGCGATTGC 71117 28 100.0 32 ............................ GTCACCGTTGACCCATTCCATCGCCTGAACAT 71177 28 100.0 32 ............................ AATTAACCCAAGCCGAAGCCGAAAACCTACAA 71237 28 100.0 33 ............................ CTGTAGCGTTTCCGGTAAATGTCCTGCAATTCA 71298 28 100.0 32 ............................ TGCAATTCAAGTTTCATTGTTTGGTGCAACAC 71358 28 100.0 32 ............................ TGAGAAACAGTGTACCACAGGGTACATCATGA 71418 28 100.0 32 ............................ ATCTAAAGATTTAACACTTTTTAAATCCCACA 71478 28 100.0 32 ............................ ATTAAAAAACTTATTGCCCGGCTACAGAGCAA 71538 28 100.0 32 ............................ CGATAGATATGAGTGCACAATGACGGGGGTTC 71598 28 100.0 32 ............................ AAAGCGCAACATTTATCGGGCGTTTTATTCGC 71658 28 100.0 32 ............................ ATATCGTGAGGATAACGGCGAGCATATAATAA 71718 28 100.0 32 ............................ TGTACAGATGACACCAAGAGCACTTATGACAG 71778 28 100.0 32 ............................ AGTCTGGATTTGGTAATGCCTTGATCCTCAAT 71838 28 100.0 32 ............................ AATAGCGGAATAAACCGCAGTAATGCGGTATT 71898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCACCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCTGGCGAGGGCTTAGGCATCGACCGCCTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCATCCCTGACTTTAAAGCTTAAGCGGTCAAATTAATTAAAGAACGCGGTTATTCGGTTTCGCAAGCTAGTCGAGAATGAGACATCGGAGAAACAGCATTGCGTCGCCGGATAAACCGGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAGGCTACCGCGATTTTAATGTCTCTCGAGCTGCAAAATACCAAGCCATCATGACGTTAAAATCGCGCGGAATCAAACGACTTTGTTCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83097-82602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVY010000036.1 Aggregatibacter actinomycetemcomitans strain Gm1168 586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 83096 33 97.0 33 ................................A ATGCCTGCGCGGGTTTTGCCGAGCTTCGCCGTG 83030 33 100.0 32 ................................. AGCGCGAAAATCTTAACCGGTAGTCAATATCC 82965 33 97.0 34 ................................A TTAATACCGTATTTTTCAGGCAAACGGCAAATAC 82898 33 100.0 33 ................................. TCACACAACCACTGTGCGTCTTCCACAGGTCGT 82832 33 100.0 33 ................................. CTTTTCGAAAGATACTGCATTGCTTTTTCGCTC 82766 33 97.0 32 ................................G TTTTATACTATAATTAGTTTTCATATAAGCCC 82701 33 93.9 34 ...............................TA TAGAAGTCAATTAATACACCAGACGGTCTAGGTA 82634 33 84.8 0 .......T.........A..A....C.....T. | ========== ====== ====== ====== ================================= ================================== ================== 8 33 96.2 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATAAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : ACTTGGCATGCGCTTTTTATGGACATTTAATCGGTTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTACCCTGCACGATTTTATACAACCCTTTTTCAATCTTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCACTTTTCCTTTCATAAAACAAAAGCTGAATCTCTCTAGATCCAGCTTTTTTTTATCTATTTATTACGCTAATTCCACGCGTAATTTTTTCGTTACATCCACCATCACTTTTAATGCGGCGATGGTTTCCGGCCAACCGCGGGTTTTTAAACCACAGTCCGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCAATGTCGTTCGGGTATTTGA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26199-25430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVY010000087.1 Aggregatibacter actinomycetemcomitans strain Gm1168 650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26198 33 100.0 34 ................................. AATCTCCCCTAACCCCCCTTTACCAAAGACGGGG 26131 33 97.0 36 ................................G CCTCTTATTTGGTAAACGAAGGTTACAAATTTGAAG 26062 33 100.0 35 ................................. CCAAGACGACCTCCGTTTAACGAAAATCACATGAA 25994 33 97.0 33 ................................C ATGAATAACATGGTTTTTTCTATGAATTGGAAA 25928 33 97.0 34 ................................T ATATAGTTTTTCATTTTTTTCCTCTCTTTTATTA 25861 33 100.0 33 ................................. TTTCCTTCTTTTTTCAAAATTTTATTTAATTTG 25795 33 97.0 32 ................................T GTGATGACTGTAAATGGCGCCCACGTATCGGG 25730 33 97.0 32 ................................G ACACCGACCATCCTGTCGGCAAGAACCCGGAC 25665 33 97.0 35 ................................T AGAATTGACAACAGCTCAAGGGGTGTGATTGTACA 25597 33 97.0 36 ................................T CGTTTAGAAGATAATGGATCTGAAGAAAAGCTAACA 25528 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 25462 33 84.8 0 .......T..........A.C...T......T. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 97.0 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TGGTCAATGCCGACAATGATTTTGAACAGACTGTATTGCCCATTGGTGCGGGGGTTGCTGTTAGCCGTAAAAATAACCACTAACTGTAGATTAGGTTGTGACATTCTGTTTAGATCAACTTACAAATAGTTTCAGGTACTCCGAAAACTGATTGATTAAAAACAAAAAGTGCGGTCAAAATCCAAGGCATTTTTAAACTATACGGAAACTACAATACATTCTCTATATCGCTCCGTCAGGCACATTTTCTATTTGGGGATATTTTAGTAGTATTAACAGCGTGTTTTCAACAATGTGCTTGTTATTCAGTTCGCTAGCCCATGGTTCTCATTAAATTCGTGCTAGGCTAGCGATCCTTATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACAGCATGCTCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGAGTTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAGTCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGATTCGGACAGCGGCGGCGGTGTCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCGTTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGATTGATATTTACGCCGTGTCACT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //