Array 1 18100-16679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXI01000037.1 Neisseria meningitidis strain NM1666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18099 36 94.4 30 ........G...A....................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18033 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17967 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17901 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17835 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17769 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 17703 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17637 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17571 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17505 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17439 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17373 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17307 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17241 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17175 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17109 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17043 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16978 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16912 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16846 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16780 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 16714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //