Array 1 841-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000631.1 Salmonella enterica strain BCW_6239 NODE_631_length_915_cov_2.04812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 840 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 779 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 718 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 657 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 596 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 535 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 474 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 413 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 352 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 291 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 230 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 169 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 108 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAG # Right flank : GTTGATCGCCGTGGCGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-1019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000063.1 Salmonella enterica strain BCW_6239 NODE_63_length_20017_cov_5.63812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 74 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 135 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 197 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 258 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 319 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 380 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 441 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 502 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 563 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 624 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 685 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 746 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 807 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 868 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 929 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 990 29 100.0 0 ............................. | A [1017] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAAATGGCG # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 507-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000752.1 Salmonella enterica strain BCW_6239 NODE_752_length_581_cov_2.02703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 506 29 100.0 32 ............................. AATACCCCGGTTACTACGCTGGCCCAGCCAGC 445 29 100.0 32 ............................. CTGGTCGGGTTGCGGTCGCCTTTGGTACTGGT 384 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 323 29 100.0 32 ............................. TCATTTTTGATCATCTCCTCCAGCCTGCTGAG 262 29 93.1 32 .........A...T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 201 29 96.6 32 .............T............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 140 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 79 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1400-2709 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000407.1 Salmonella enterica strain BCW_6239 NODE_407_length_2751_cov_3.27567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1400 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1461 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1522 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1583 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1644 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1705 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1766 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1827 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1888 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1949 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2010 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2071 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2132 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2193 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2254 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2315 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2376 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 2437 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2498 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2559 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2620 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2681 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : CGCAGACGGCGCAATTGGATTCGGTGATCGGGGTGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-1391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000543.1 Salmonella enterica strain BCW_6239 NODE_543_length_1437_cov_3.00582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 101 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 162 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 223 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 284 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 345 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 406 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [426] Deletion [446] 448 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 509 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 570 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 631 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 692 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 753 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 814 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 875 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 936 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 997 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 1058 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 1119 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 1180 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1241 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 1302 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 1363 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGTTGATCGCCGTGGCGGTGAGATTAGAAACGCGG # Right flank : CTTTCCTTGCGTCAATTTTGAGGGAGATTGATGTGTTCCCCGCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 958-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000612.1 Salmonella enterica strain BCW_6239 NODE_612_length_1005_cov_2.92887, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 896 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 835 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 774 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 713 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 652 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 591 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 530 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 469 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 408 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 347 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGATCCCGCGCTCTATTAAAATCTTTGATTGCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 640-1096 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXF01000580.1 Salmonella enterica strain BCW_6239 NODE_580_length_1164_cov_2.58674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 640 29 100.0 32 ............................. GGTATGAATCCGATGCATGAGGGTGAACTGGT 701 29 100.0 32 ............................. CCCAATTTGCAAGCGTCGCGGAAAATTTCGCA 762 29 96.6 32 .............T............... TAAATTGCAAAAGAATTCACGGAGATTACGAC 823 29 96.6 32 .............T............... GCGGTAATGTTGGCTGTCTGCGTGATAAATGC 884 29 96.6 32 A............................ TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 945 29 100.0 32 ............................. GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1006 29 100.0 31 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGC 1067 29 96.6 0 ............T................ | A [1091] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //