Array 1 129014-127966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEO010000003.1 Salmonella enterica strain CR14 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129013 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 128952 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 128891 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 128830 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 128769 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 128708 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 128647 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 128586 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 128525 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 128422 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 128361 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 128300 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 128239 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 128178 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 128117 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 128056 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 127995 29 96.6 0 A............................ | A [127968] ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.8 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146398-145272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEO010000003.1 Salmonella enterica strain CR14 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146397 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 146336 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 146275 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 146214 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 146153 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 146092 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 146031 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 145970 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 145909 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 145848 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 145787 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 145726 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 145665 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 145604 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 145543 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 145482 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 145421 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 145360 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 145299 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //