Array 1 505513-501849 **** Predicted by CRISPRDetect 2.4 *** >NC_022998.1 Spiroplasma apis B31, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 505512 35 86.1 30 ...C.-...GTA........................ AATCTCCAACTCCTTGTTACTCTCAATCTT 505447 36 100.0 30 .................................... ATTATTTGTTTCGTAATTATTTAAATCTAA 505381 36 100.0 30 .................................... TATAGGTTGTATAAGATACTTGATCTTGTT 505315 36 100.0 32 .................................... AACCCCTAACATGATGTAAAAATGCTTATTGC 505247 36 100.0 30 .................................... GTTGTCGGGGAAATAGGTATATATTGGTCC 505181 36 100.0 30 .................................... TCAAATAGATGCGGATACTTTGTTTTCACT 505115 36 100.0 30 .................................... TAGATTGGATTTTTTATTGAACGAAAATGT 505049 36 100.0 30 .................................... TGACCAATAAAAATATTAGTTAATGAAAAA 504983 36 100.0 30 .................................... AGAAATGGAAAGGTTTTAAAATGAAAAAAA 504917 36 100.0 30 .................................... CTTATAGGTAAAAAATATGTATGTCAATAC 504851 36 100.0 30 .................................... CCCGTACCTTGGTCAAAGCCTTCAGCAAGT 504785 36 100.0 30 .................................... AAAGTTGTGGTTGTTCAAAAGCTATGAACC 504719 36 100.0 30 .................................... AATTACCTCTAATAAAAGTTTTTCAATGAC 504653 36 100.0 30 .................................... TTTGTACTTGATCGTAGGGTCTGTGTTTTG 504587 36 100.0 30 .................................... TTGAATGCCATATGATAAGACTTTTGTTGA 504521 36 100.0 30 .................................... ACTAATTTCCATTTCGTTGTACATAAAATC 504455 36 100.0 30 .................................... AAATGAAGACTTATAACGAACAATTTACGA 504389 36 100.0 30 .................................... CAACCAATAAAAATATTAGTTAATGAAAAA 504323 36 100.0 30 .................................... AAAAGAGTTCGTTGAGAAACTAACTATTGA 504257 36 100.0 30 .................................... TCTATTAGTTGTACTATTTTTAATAGGTTC 504191 36 100.0 30 .................................... CCATCTTTAGCTAAGAAATATAACTTATTA 504125 36 100.0 30 .................................... GAAAGACTTGAAGGTTGACGAAAAAAACTT 504059 36 100.0 30 .................................... TATGGGAAAAATATTGCGTTTTAAATACTG 503993 36 100.0 30 .................................... CAAGACCAATGCTCAAATTCAATGTTTTTG 503927 36 100.0 30 .................................... TATAATTTCAATTTTTACTATTTCTTTATT 503861 36 100.0 30 .................................... TAAACTCCCCTTTCAATCAGGATCTCCCAT 503795 36 100.0 30 .................................... AATGTGGTAAGTGTGACGGATGAAATAGAT 503729 36 100.0 30 .................................... TAGATTGAATTTTTTATTGAACGAAATCGT 503663 36 100.0 30 .................................... TCAAATATGATTATTAATTTCAATTTTAAT 503597 36 100.0 30 .................................... ACTCCTTTGTTTTAAGTCTCTCGGACTGAT 503531 36 100.0 30 .................................... ACTACTGATAATGATGATTCCGAAGTTGTC 503465 36 100.0 31 .................................... TTATGAACAAGTAATTATGTATTGAAAAAAA 503398 36 100.0 30 .................................... CTAGTTTACAAATTAGTAGTTTAAAGATAA 503332 36 100.0 29 .................................... CTTTTCCGTCTGCATTGTATTCATATTTT 503267 36 100.0 30 .................................... GGTTGTGAAACATTGTTTACATCTATTGAG 503201 36 100.0 30 .................................... ACTTTTAACAATCTTGTCGATCAAGAATAT 503135 36 100.0 28 .................................... TGAACGAAATCGTACACGAGAAAAAAAA 503071 36 100.0 28 .................................... TGAACGAAATCGTACACGAGAAAAAAAA 503007 36 100.0 30 .................................... GGCTTGTAGAATGCTAATAATAACCTTTTT 502941 36 100.0 30 .................................... CAACTAATAAAAATATTAGTTATTGAAAAA 502875 36 100.0 30 .................................... ATAGGACGTGACATTTCTTTTCCCTTTTCA 502809 36 100.0 30 .................................... TACAACGATTATGTCTATGATGACAAAATC 502743 36 100.0 30 .................................... ACACCTTCAATTGGTTTTTTTAAAACAGGT 502677 36 100.0 31 .................................... TACTAACGGACAAGTTTTCATTATAAAAATG 502610 36 100.0 30 .................................... TTGGTACAAGCAAGCGAGTATTACAATAAT 502544 36 100.0 30 .................................... AAGGCGCATTTTATTATTTTTGTAATTATC 502478 36 100.0 30 .................................... AAAAGTTACGATAGCAAATATCTTAAGTTT 502412 36 100.0 30 .................................... ATAATAATTGTCAATATTTTTTAAAGTTAT 502346 36 100.0 30 .................................... TGTTATAATATAACTATTGAAATACATTTC 502280 36 100.0 30 .................................... TTCAACTTGCAAATCCTTTATCGGCAAAAT 502214 36 100.0 30 .................................... TAATGATAGGTACTTTGTTTATAAAAATAG 502148 36 100.0 30 .................................... TCTAGAGTGTCGTACTCGTCTTGTGATACT 502082 36 100.0 30 .................................... AAGGTACACATACATTGTTAATTGGTAAAG 502016 36 100.0 30 .................................... TTTATCATAAAATGTAACGTCTCGTTGTTT 501950 36 100.0 30 .................................... TAGATCTGTTTGAGAATATTTAGAGCGATT 501884 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 56 36 99.8 30 GTCGTCTATTCCTTAGATATGTCAGATAACTAAAAC # Left flank : TTATTTGTTTTCATATTATTTTTTTATATTCTGAATTAATGCTTATTTGCTTTTCTATAATAGCTAATGGTTTTCAATGATTGTGATATGAGAGCATAATTCCGTTAGGTTCATAACTATCATTACAAACAACTAGAAACACATTATTATCTAATAATTTAGAAATAAGTTGTGTAGAAATTAATGTGTAATTATTTTCTAATATTACACAGTTAATATCACTTAATGAGAATGTTAATGATTTGTCAGATTCCTGTTTAGTATTTTCTATTTTTAATAAATTATTTTTAAGCGATAATTTATCATACTTATTTATAATTATTGTTTTCCAAGACAAAACGTTATTCCTTTCCTATATACATAAATATAAGTTCATTTTATGTAATAAAAAAGTAAAAGACCATACCACTATAGTTTGAAAATGTTAGTTTTCAAACTATATTTCCAAATAACCTAACAAAATTAGTAAAATTTTAAAGGTAATTTTGTAGGGTTTTTTA # Right flank : CTCAAATTATGCTTTACCTAAAATATCTATTGTTATTATCTTAATTTCTTTTAAAATATTTGATAATGAGTCATAACAGTTTTGTGTACCGAATATCTCTTTATTTTTGTGTAACGTTGAAATATATGTAGTATTTATTTTTGTTGCACAAATTTGTGCTCCCATTTTAGATTTAAACACTTTGTACTCATAATTGTCGTCTTTATTCTTATAGAATACTGTGTCATTTTGTCTCAAAATCAGCTCATTATCTCTTAGTTTTAGAATGTTTTTATTTTTAAATATATCTATTTTTTTAATCCATCTAGGTTTATTAATACCTTCTTTGTCTATTATAACTCCATAATAAACATTAGTTTCTCAGAGGTTTCCATGTCTATCAATGTGAAATTGATCTTTGTTGGAATCTTTTAATAATTTTTTTGCAGCCATTTTTTCACTTGATGTAACAGATCCAGAAACTTTATGATTTACTTTATAGGAAACAAAAGGATAATGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCTATTCCTTAGATATGTCAGATAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTCGTCTATTCCTTAGATATGTCAGATAACTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //