Array 1 252002-253623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIQ01000001.1 Lacticaseibacillus rhamnosus strain Lrh14 Lrh14_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 252002 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 252068 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 252134 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 252200 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 252266 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 252332 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 252398 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 252464 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 252530 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 252596 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 252662 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 252728 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 252794 36 100.0 31 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCGG 252861 36 94.4 30 TA.................................. ACAGTTGAGAAAAGAAAATACGCATTTAAA 252927 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 252993 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 253059 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 253125 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 253191 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 253257 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 253323 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 253389 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 253455 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 253521 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 253587 35 83.3 0 .......................AA.C...-..T.A | AA [253608] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 98.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //