Array 1 159072-159766 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLYG01000003.1 Lactiplantibacillus pentosus MP-10 isolate Alorena table olives, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 159072 36 100.0 30 .................................... AAAATCATTTGTAAAGTTCAATGGCTTGTT 159138 36 100.0 30 .................................... GACGCTAACGATCGCCCAACTAAGGTATGG 159204 36 100.0 30 .................................... TTACCCGCTTGCATGGTACAATAGGAACAT 159270 36 100.0 30 .................................... GGCAGCGGACGGATGGTCTGCACCTGCGCT 159336 36 100.0 29 .................................... GGAACGATGGGGAAATAAAGGTTCGCGCC 159401 36 100.0 30 .................................... AAGAGTATCAGGATGCCCTAAAGACTGCTA 159467 36 100.0 30 .................................... TTTAAATTCTCCTTTATCTCTTATCGTTTT 159533 36 100.0 30 .................................... TTGCTGTTAAGCTAACTGGCGACATGAGCA 159599 36 100.0 30 .................................... TTCCCATATTTCCGTTCAAACAACGTAACT 159665 36 97.2 30 ...........C........................ CGAGCCAAACAAAATTTCGATGTTCAGCAA 159731 36 86.1 0 ...........C............T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : CACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAAATCAGATTGTCACTAGGTGGACGATAAATTCTTGCTTCGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCACAATGACGGTAAAAGTACAAAAACAAGGTCATTCACTAATGATTCCGATACCGGCAAACTTCCATGTTAAAGATAACGCGGAATATCAACCGGTTATGGATGACGACACCGGAATCTTATCGTTTATCCCAGTGCATGAAAATATCTTTGAACAAAATCCTGACTATGACTTCCAAACTGCGCTCAAAGAAATGAGTTTACCCGATAATGGGGAACTGGTTGATAAAGAAAACGTTTGGGAATGAATCAGAAGTAGCATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1319918-1319339 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLYG01000003.1 Lactiplantibacillus pentosus MP-10 isolate Alorena table olives, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1319917 28 100.0 33 ............................ ATCATCATCGCGGTTTTCGTGACCGCGAAGGCG 1319856 28 100.0 33 ............................ TAACTTCCTTTCCTTATCTACAAGTACATTGTA 1319795 28 100.0 33 ............................ CGAATAACAATCCCGTGCCAAAAAGGAACGCTC 1319734 28 100.0 33 ............................ TTGTTACCCGCCCGATACCGGTCAACATATTTT 1319673 28 100.0 33 ............................ TGTTGTCGGCGGATGTTCCGCCGATTCGTGCAT 1319612 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 1319551 28 92.9 33 ..........C.......A......... TGGTTTAAAGATTCGAACGGAAATTTAGACTTT 1319490 28 89.3 34 ........T.C..........A...... TGGCTTTTGTCAGCGCTTCTTCGCAGAACACTTG 1319428 28 92.9 34 ..........C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 1319366 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 96.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTCCCCACCGCTCACAGTCATTCGCAAGCTCGGCGCAAGGTAAATTAAATTAGAATCTAGAGCAAAAAAAGCCGCCATATCCGAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1611398-1610289 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLYG01000003.1 Lactiplantibacillus pentosus MP-10 isolate Alorena table olives, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 1611397 28 100.0 33 ............................ TGGTTACGATGATTTTATTACGAAATTAACGGC 1611336 28 100.0 33 ............................ CGAATCGCGTCATGCATTTGACTAACTACGATA 1611275 28 100.0 33 ............................ TAAAACCCTTACCAATTGGTAAGGGTTAAGTTG 1611214 28 100.0 33 ............................ TAACGTCGGTGTCGACAAAGCTGAACGCTTGAC 1611153 28 100.0 33 ............................ TCATCAGGCCAATAGCGGCGTTAAGTGCCAACG 1611092 28 100.0 33 ............................ TACCAATAGCTTCGCGCTGCAGCTTAAACTTCA 1611031 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 1610969 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 1610908 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 1610847 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 1610786 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 1610725 27 92.9 137 ..A..................-...... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 1610561 28 85.7 33 ..A.......T.C..A............ TCAGCTTCAGCGATTAGTGATTCAGAAGATTTG 1610500 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 1610439 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 1610378 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 1610316 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 17 28 95.4 40 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAGATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAGCGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1614532-1614016 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLYG01000003.1 Lactiplantibacillus pentosus MP-10 isolate Alorena table olives, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1614531 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 1614470 28 96.4 33 ..........................T. CTGCGTTGCCATTTTGGTGAAGTTTGCACTATT 1614409 28 100.0 33 ............................ TCAAAATGCCTCAGCCACGGGCGGGAAATACTC 1614348 28 96.4 33 ..A......................... TACTTGCTGTATTCAGACGTTTGCGCGTTCACA 1614287 28 96.4 33 .................A.......... CAAAGTCGCTGATCGGTATGATACCAAAGCACT 1614226 28 100.0 33 ............................ CGGGAGAACAAGCTTGGTATTACAAGAACATCG 1614165 28 92.9 33 ..A............A............ TTAATGATGCGATATACGGGCAGCTTCACATTC 1614104 28 89.3 33 ........T.......T.A......... TTAGTGACCGATTGACATTCCTATATTTGGAAC 1614043 27 82.1 0 ..A............A......C-...T | G [1614018] ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAGAATTCTGGAGATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGCTGATTTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //