Array 1 269074-268381 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXD01000005.1 Neisseria subflava strain C2009010520 C2009010520_S24_ctg_1025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 269073 33 100.0 33 ................................. GCCGTTGATGATGTCAAATAACGCCTGGATATA 269007 33 97.0 34 A................................ AGAAGCATTGATAACAACACATTCCCCTAATCTG 268940 33 93.9 32 GA............................... AGGTAGGCAGAAGCCGATAGCAAGACATCGAA 268875 33 93.9 32 AG............................... TCAGGCCATTTTAGCCAAACATTCATGTCTTG 268810 33 93.9 32 AA............................... ATCGCCGAATACCAAACGCCTGCCGAGCGTGA 268745 33 93.9 32 AT............................... ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 268680 33 100.0 32 ................................. CCTTTGAAACAAATTAATTTCGAATTAAAACA 268615 33 97.0 33 A................................ CAATCGCCACGCAACATCATGACATTGCCCACG 268549 33 100.0 37 ................................. GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 268479 33 100.0 33 ................................. CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 268413 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ===================================== ================== 11 33 97.0 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTTCAAACACTTCATCCGCAGGTGC # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 400455-404431 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXD01000003.1 Neisseria subflava strain C2009010520 C2009010520_S24_ctg_1021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 400455 33 93.9 33 CT............................... AGGCGTGTTTTGATTTGTCTATCAGTGAGCCAA 400521 33 93.9 34 TT............................... CCACACTGTTACTGTGAACGGCTTGCCTGACGGT 400588 33 97.0 33 G................................ AGGCATTGAAAAGCTGAACAACGTCCAAATGGG 400654 33 100.0 32 ................................. ATAGTTTTACCTCAAAAATTAATAAAATTCCG 400719 33 93.9 32 CT............................... AATTGCCTTTGATTCCCCTTGTATGAATCCAG 400784 33 93.9 33 TG............................... CACAAGCCGCGCGTTGAAGGACTACGGCTACAC 400850 33 97.0 34 G................................ ACGAAGACAAAGCGATGAGAGGCGCACGAGGTGG 400917 33 93.9 33 TG............................... AGCAACTGAACAGTGAGCTTGAGCAGACAGACG 400983 33 97.0 32 G................................ CACAACTCGAACGTCTTGACTTGGAAATCGAG 401048 33 93.9 32 TT............................... CCGCCAACATTACCGGCTGGCTTGCAAGCGAG 401113 33 97.0 34 .T............................... AAGAGTATGGGGCAGACCTTTATTCAAGAAATGG 401180 33 93.9 31 TT............................... ATGCTCATATCCCATTTCCGACAGGTTGGTT 401244 33 97.0 33 G................................ ATGACAGGCTGAATATCAACAATCACATTCTGA 401310 33 100.0 35 ................................. AAGGCTCGTTTTGAACGCCCTGATTTGCTCAACGG 401378 33 97.0 33 T................................ ATACTTGTACGCAAACAGCGTCAAGAAAAACGA 401444 33 97.0 33 .A............................... ATCACACCTTTAGAGCGTTTCAAGCCTTGCACT 401510 33 93.9 33 TT............................... GGCATCAATTAATAAGGAAAGAGTGTCTAGTCA 401576 33 97.0 32 .G............................... ACACGTTATTGTGTGTTGTTGTAAAAAAGGTA 401641 33 97.0 32 .A............................... GATATAATCTAAACGCACGGTGTCAGGGTGTG 401706 33 93.9 33 GG............................... TGGTGTCTCTTCCCCTGCTCCGGTCGGAAAGGG 401772 33 97.0 32 T................................ AAATAGGGAAGATAGGCATTTAACGGAAGAGA 401837 33 93.9 31 TG............................... TGCTTGTGATATTCCCCATAACTTTGACAGC 401901 33 93.9 34 TT............................... CGTAGTAATTTTGACAGACGCAATGCTGTCATGC 401968 33 100.0 33 ................................. GACAAGTCATAGTGATATACCAAATCAGGAACA 402034 33 93.9 33 GA............................... TCGCAAATAGTCGACTTCATCTTCTGACAAATC 402100 33 93.9 31 CG............................... CAAAGCTTCAAACACTTCATCCGCAGGTGCA 402164 33 97.0 33 T................................ GCCGTTGATGATGTCAAATAACGCCTGGATATA 402230 33 100.0 32 ................................. AGGTAGGCAGAAGCCGATAGCAAGACATCGAA 402295 33 97.0 32 .G............................... TCAGGCCATTTTAGCCAAACATTCATGTCTTG 402360 33 97.0 32 .A............................... CCCATCGTCAGACAACATCAAATCGTCTGCCG 402425 33 93.9 33 TG............................... ACTTCGCGCTGCCTGATTTTGGCGGCAATATAG 402491 33 93.9 34 TG............................... TCCGTCAATCAGGCCGTCTGAATCTTTCCAGCGG 402558 33 97.0 32 T................................ GTGATTCTCGCTTCCCAATTTCAGACGGCCTG 402623 33 97.0 32 T................................ CGTAGCCACTAGCGAAAAGTACACCGACAAAA 402688 33 100.0 32 ................................. AATGCCCTGATGATTGTATCAACGCAATACGG 402753 33 93.9 32 TT............................... CATGATTTGACGCGGCGTTACTTTGGTTATCG 402818 33 97.0 33 G................................ AATGACACATGAATCCATGCAGATGATGTTCCT 402884 33 93.9 33 CT............................... ATTTTATAGACTGGCTGTTGCTTGCGGTCAAGA 402950 33 97.0 34 .T............................... CGTCCGGAATATGAAAAGCAAACTTGATTTACAG 403017 33 100.0 33 ................................. CAGCTTGCCGAAGCCATCAAGCGCAAACTTGAA 403083 33 97.0 34 G................................ CCGTTTATCGGTATCGCGCGCCTGATTGTTAATA 403150 33 100.0 34 ................................. TGATTGAGCTGAGCGGTAAGGGTTGCAATGTTGC 403217 33 97.0 32 .A............................... AACAACAGGCGAATTTGGGCCATCCAATCCCC 403282 33 97.0 34 T................................ CGTAGTAATTTTGACAGACGCAATGCTGTCATGC 403349 33 100.0 33 ................................. GACAAGTCATAGTGATATACCAAATCAGGAACA 403415 33 93.9 31 GA............................... ATTATTTACCTCATAATTAATTGATTAAATC 403479 33 97.0 31 C................................ CAAAGCTTCAAACACTTCATCCGCAGGTGCA 403543 33 97.0 32 T................................ AGGTAGGCAGAAGCCGATAGCAAGACATCGAA 403608 33 97.0 32 .G............................... TCAGGCCATTTTAGCCAAACATTCATGTCTTG 403673 33 97.0 32 .A............................... CCCATCGTCAGACAACATCAAATCGTCTGCCG 403738 33 93.9 33 TG............................... AATGACACATGAATCCATGCAGATGATGTTCCT 403804 33 90.9 34 CT.......................A....... TACGCAATCTTCGACGCAGATAAGACACTTATTG 403871 33 97.0 34 .T............................... CGTCCGGAATATGAAAAGCAAACTTGATTTACAG 403938 33 100.0 33 ................................. CAGCTTGCCGAAGCCATCAAGCGCAAACTTGAA 404004 33 97.0 34 G................................ CCGTTTATCGGTATCGCGCGCCTGATTGTTAATA 404071 33 100.0 33 ................................. GAAGTACCTGAGGGTCATGTAATGATGGTTTAC 404137 33 97.0 34 .G............................... TGATTGAGCTGAGCGGTAAGGGTTGCAATGTTGC 404204 33 97.0 32 .A............................... AACAACAGGCGAATTTGGGCCATCCAATCCCC 404269 33 97.0 31 T................................ ATTATTTACCTCATAATTAATTGATTAAATC 404333 33 97.0 33 C................................ TCGCAAATAGTCGACTTCATCTTCTGACAAATC 404399 33 93.9 0 CG............................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 96.4 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCAACGCGTAGCAAAATTGTGTCTGGACTACGGCGTGCGTGTGCAGTATTCAGTGTTCGAATGCGACATCGCTCCTGATCAGTGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : CAAAGCTTCAAACACTTCATCCGCAGGTGC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //