Array 1 13929-15855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000015.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_15_length_57840_cov_73.6905_ID_2797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13929 30 100.0 35 .............................. AGGTAAAAAACACATCTTAAACCGTTGATATATAA 13994 30 100.0 35 .............................. TCCATATATCTCCTTCATTCATTTTTCCTATATCC 14059 30 100.0 34 .............................. TGTCTAGCGAAGTTTTATAATGCATGGTTTTTCC 14123 30 100.0 34 .............................. TCAAATCAAATCGATATTGTTTCTAAAGTATCAA 14187 30 100.0 34 .............................. TAAATCTTTACCCCACTGGAGCGTGCACCTATGT 14251 30 100.0 37 .............................. GAAGGAAATAAGATACAGGATTTTCCTTCACAAGGGG 14318 30 100.0 36 .............................. TTCAAACACTCCTTTAATTAGAAAAGGAGAAATAAT 14384 30 100.0 35 .............................. TTGTAAATGATGATGTATTATATTCAGAGATTACC 14449 30 100.0 35 .............................. GATATGGGAGTCGGAAAACACGCCCTTGTGATTGA 14514 30 100.0 34 .............................. TACTCTCTATTAATTCATCACTATGCTTTTTCAT 14578 30 100.0 37 .............................. TGTTGGCTATTTTGACAGAGCAGTTAAAAGTTCCGAA 14645 30 100.0 35 .............................. GTTATATATTTTATAATTTCTCTTTCTGCTTCTCC 14710 30 100.0 35 .............................. TAACGTAGATAAAGGTATGCCTGATGCACAATTTA 14775 30 100.0 36 .............................. TTCATAAAATCTTCATAAAAATGAACTAAAAACTGT 14841 30 100.0 36 .............................. TTTTCTAAGATTGATATTTGGCTGTTATTTTCCATA 14907 30 100.0 35 .............................. ATTTCTATAGATAAACTAGCTATATCTTTTTTAAG 14972 30 100.0 37 .............................. CAGAATTAAAAGGTGCGTATATTAAAGTAGGATTAAC 15039 30 100.0 35 .............................. TCTCCAAAAGTAGTGCTAGTTATTGGAACGTTCCC 15104 30 100.0 35 .............................. TTTTTGGTAGTTGTTCTTTCTTTACCTTTCCTTCT 15169 30 100.0 36 .............................. CTGTTTTTATGTCAATTCCCAATCTTTCTAGCACAA 15235 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 15301 30 100.0 36 .............................. TTGTATAAATATATAGCTTTTTTCATTTTCAAGCAC 15367 30 100.0 34 .............................. TCTATAAAGTTATATTCTTTAGCTTTTTGAGCAT 15431 30 100.0 36 .............................. AAAAAAATGGACTGAACTTTGGAAAGACTGTTTAAA 15497 30 100.0 37 .............................. GCGCATATTCCTATTGTATTTGTATTATGTCCTTTGC 15564 30 100.0 35 .............................. AACTTATCCTTATCTTGTCCATAATCCATATCTAA 15629 30 100.0 37 .............................. AAAGGAGATTAATTTTTATGGATCTATTTGCATTAGA 15696 30 100.0 35 .............................. TTTTTATATTTGTTTCTAATAGCATCTGCTGCTAA 15761 30 100.0 35 .............................. AGTATTACATTAAAAGATACTACCGTTAGTTCTGC 15826 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.7 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTCAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATAAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TAAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 27330-26774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000016.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_16_length_57701_cov_66.4597_ID_2799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27329 29 100.0 36 ............................. GTTATTTAAGATACCTTTTACATACTCAATGTTTCT 27264 29 100.0 38 ............................. TCGAGACTGGAGTGGTAAAGTTGCTTTAGTAGATACTA 27197 29 100.0 37 ............................. AAATTAAATGTTGAAAATTCTTGGTTAACGGATTCAT 27131 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 27066 29 100.0 37 ............................. CCTAAAAAACAAAAACACCCTAGCCAATAGGCTTAGA 27000 29 100.0 38 ............................. AAAAGGTTAAAATCTGCACTTATAATTCTAATTGGTAC 26933 29 100.0 37 ............................. TATCCGAATTCAAAGTCGCTTTGTATTCTATCAGCCA 26867 29 100.0 36 ............................. TCTTTCAATATCTTCAACTATATTTGCAGTAGGATC 26802 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.6 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : GAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAAATATCCATAATGGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 35679-35217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000016.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_16_length_57701_cov_66.4597_ID_2799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 35678 30 96.7 36 .............................A ATTGAAGATTTTATTCAAAGATTAACACAAATTCAT 35612 30 100.0 34 .............................. ATTAAATAGGACCTGTGAAAATAGAGGAGATCAT 35548 30 100.0 36 .............................. TCTTTCCACTTATTTAAATTATTTAATTCCTTGCTT 35482 30 100.0 35 .............................. GCAGCTATATTAAACAACTAATCGAAAAGGATATT 35417 30 100.0 35 .............................. TAGCCTTCATTCTGTGCAGAGTTTATAAAACTAAT 35352 30 100.0 34 .............................. GTAGAAATTGTATCTGCATAAGCAATATTATTAG 35288 30 100.0 12 .............................. GAGCGGTAAACG Deletion [35247] 35246 30 90.0 0 .....C..........A............A | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.3 32 GTTGAGAATCAACAAAGGATATGTTTAAGC # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAAATTATTAGCAGATACTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : ATTCGAAATATCGGAATATGTCTAATATCTCGAACAGTTGAGAATCAACTAAGGTTTAATTCATATAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTATCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 102318-101956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000004.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_4_length_197847_cov_35.688_ID_2775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102317 29 100.0 38 ............................. TTTAGTAAATCTTTTAATAAAACTTGTCCTGAAGGTAA 102250 29 100.0 37 ............................. GCAATTTTTATAATTAATTGTTGTGTAGCTGGACTTA 102184 29 96.6 39 ................G............ TTGCATTTGAATTGCATTTAAATTATCTTGAGATTTTGT 102116 29 96.6 36 .........G................... ACCCAATATTCATATAGTAGGTTAAGGTCTTAAATT 102051 29 96.6 38 ................G............ AAAGTATAATAATATAAACTAGCACACGTAAATTGGTA 101984 29 89.7 0 .........G.............TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 38 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : TGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAATTAGTTTAGAATCTTAAAATATTAAGAATGTGCTTGATTAGGGGGATTAAGAATGGAAAAATATAAATATGTTATAAAAGTTGGATACAATAAGTATTTGCAGTTTATAGATGACATAGAAGATTATTGGCTAGTTAATAATAAGAAATTGGCTAAGGTATTAAGTGAAGAATGGTATGAGAAAAGAGTTGAGATATTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAAAGTGATTGTAAGGTAGTTATATCAATACGCTTAGCTATTTATTATAAAAAACGGCTCACTGCAAAAACACACTATTTATTTGAAGTTTTAATGGTCAAAATATGGGATTATATAGTATAATAGAGATATGCAAAGAAAAATAGA # Right flank : AGGATTAACTTTAAAAAGTTAGTCCTCTTTTTGAATAAAAAATCACAAATATTAATAACTCTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAATATGGAGATATTACTCGCGATAATGGCATGTATAGTTGGATTGTTTATTTATATAATCGTTAAGGATGAAAAAAGAATCAATGCTGAAAAAAATGAATATGATATAAAAATAAATTGGCTTTGTGATTACATTGGAGGTATACCGTTATTTGATGAGAATAAAAATAATATAGGCAAACAAATGGATGTGCAAGTTAGGGGTAAAACTAATAGCTTATATATCAAAAGCTTATCTAACGCAAATGAAATAGATATATCTATTAATAATATAACAAATATGGAATCTAAAACTAAAGAGCAAATAATAAGTAAACAAGTAAGTCCATCATTGACTAAAATATTAACTTTTGGGGTATTTTCAAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 176103-176785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000004.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_4_length_197847_cov_35.688_ID_2775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 176103 29 100.0 37 ............................. CTTGAAATTATGTGCTAAAACAATGGGTAAAATGTTT 176169 29 100.0 36 ............................. TGTCTGAGGTTTTCTACGTAATCACGTAGCTGTTCT 176234 29 100.0 36 ............................. TCTTTAACTGTTACAGTCATGTCATTGTTATCTACA 176299 29 100.0 40 ............................. TACTTAAAATTAACCATTACAACATCTCTAGTAGTTTCAC 176368 29 100.0 35 ............................. GTTAACTCTGCTATTTCTCTATTTGTAAAGTTTAG 176432 29 100.0 36 ............................. TCTTTCATCTTTTTTAGCAATCCAGTGTGTTGCTTC 176497 29 100.0 36 ............................. TTTCTATATAGACTATTATATATTTTTACTTTATCT 176562 29 96.6 37 .........G................... CTCATTCAGTTCACCTCTTGTTATAATGTTAAACTTT 176628 29 96.6 35 .........G................... TCTTCTAACATTTTAATTGCTTCCCATGTTTTATA 176692 29 100.0 36 ............................. ACAGTAAACCCCTTTGGTACTTCTGTATTTTTATCT 176757 29 82.8 0 ...C...........CG...A.......T | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 97.8 36 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : CTAACTGATACTATGCCTAAGGTTGTTATATTAGGTGAATATAAGTGGGGAAATAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATACGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAGGAACTGCAAGATTATGATGATGTTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAAAATATTTAGAAAAAACGATGTAATATTATAAATTTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATGGTTGTAGAGATTTACTATAAAAAATGGTTCACTGCAAAAACACACTATTTATTTGAATTTTTAATGGTCAAAGTATGGGATTATATAGTATAATAGAGATATGAAAAGAAAAATAGG # Right flank : TAGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAATGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGATACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATTATATATCTGACGAATTAAAATCTTCGCTAAGAAAATGTATAAGTTATCATGATGTTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAACATAGAAAGATTAGACATGAAATATTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTGAACTATATTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 179044-179732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAI010000004.1 Clostridium botulinum C strain IZSVe-TV_10018_12 NODE_4_length_197847_cov_35.688_ID_2775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 179044 29 100.0 35 ............................. ATGATGGAAGTAACTTAGATAGTTACGCGTCATAC 179108 29 100.0 38 ............................. TAAAATTCATATAAAACGCCTCCTTTATGCTACATTTA 179175 29 100.0 35 ............................. TCAGGAAACATCAAGTATGATAAATCTAAAAGTAG 179239 29 100.0 38 ............................. GGTATCCAGCTTTTTGTGCTTGTTTTCTAAAGTCTTTT 179306 29 100.0 38 ............................. TTAAAATGGAAAAGCCCAGAAGAACTTGAAAACAAAAT 179373 29 100.0 36 ............................. GCAGTAGAGAAACTATTTGGCGCCATTCTTATTCTT 179438 29 100.0 42 ............................. TATGTCTAAAGATTGAAGTTGTTCATTTATAGCATTTTCCTG 179509 29 100.0 35 ............................. GTAACCAGCAGGTGCATCACCTAACCAACCATTTA 179573 29 100.0 36 ............................. CTTGATACATGGTAGCTAAGTTATTCCAATAGTCTG 179638 29 96.6 37 ............................C AGTTACAAAATATGCAATTTTCATCGGTACTATTTCT 179704 29 89.7 0 .........G......G...........T | ========== ====== ====== ====== ============================= ========================================== ================== 11 29 98.8 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : ATAAGTATAAATCACAAATACAATTTATAATTAATAGTATTAGAGTGGGATATTATAATAAAAATGCTTCTGAAGAAATGCTAAGCAATGATGATACAGTATCAGTATTGCCTACTAATTTATTAAGCGAATATGCTAAATTAAGAGAAGAAAAAAGATATATAGAAGCCAACGAATTATTTGTAAATGCTAAAAAATATATATCAAAATATAATAAAGAGTTTAAAATTTATATAACATATAGTGTATACGATTGTAGAGGATTAGTTTATGAAGAAATTGATATAAATAACCAAATAATTTAATATCTTATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATATGTCTAGCTATTTATTATAAAAAATGGCTCACTGCAAAATTTAATGATTTTATACTAAAAATAAGATGAAAAATATGGAGTGATATAGTATAATAAAGATATGAAAAGAAAAATAGG # Right flank : TGAGTCATTAAAATCTATCTTTTATGATAATGGAAATTAAATTAAAGAATTTCAAAAATAACCGTTGACATAAATGGAAAACAGTAGTAGAATAATAAATGTGGAAAGAAAATATAAAGTTAGTATGGGTTGGAACATTTTGTTCAAGCCCTTTACATAAAAATATTAACAAAATTAAATTAAGTAAGAGGAGGAATTATATGACGAATAGTTTAATGATTTTTGAAGGTTCAGAGTTAGAAATTTTAACAAAAGAGGATGTAAATTTTGAGTTTGAAGGCACAGTTTTATTCAATGGGAAACAAGTATGTGAGATATTAGAGTATAATATAAACAACTACGCTAGAGAAATTACTAAGTATTGTGATGAAGAAAATGTTCAAGTAATTATAAAAGAAAGACTCAGTTCCAAAATGGAAGAGAGTTTAAAACTCAATCCGAATATCATAACACTGGGGCAAAGAGGAACAAAGTTTATAAATGAAGATGGTGTTTTTGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //