Array 1 493492-494913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXE010000003.1 Listeria marthii strain FSL L7-0369 NODE_3_length_500293_cov_70.264662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 493492 36 100.0 30 .................................... GGAAACTTCTGACCAATGGCAAACACCAGA 493558 36 100.0 30 .................................... TAGACGAAGTTTTAAAAAATTATGAACTGT 493624 36 100.0 30 .................................... TAACGGTTGGTTGGTTCGGCAAAGAAATAG 493690 36 100.0 30 .................................... TTGCTAGAATGCTAGATATAAAACGAAAAA 493756 36 100.0 30 .................................... TCGCGGCTTTTGGTGTGGTTATTGCGGTTG 493822 36 100.0 31 .................................... TATGACGACGTAAAAGCCTACACCCCGGCGT 493889 36 100.0 30 .................................... TTAATTCCTTGTCGCGATCCATTAAATGGT 493955 36 100.0 30 .................................... TCCTATGGTAATAGTGTAGACGAGCGGACT 494021 36 100.0 30 .................................... TTTCGTTCACCAACTAACCTGCATATAAAC 494087 36 100.0 30 .................................... TTGCATAGAAAAAAACCCCCGCAAAATGCG 494153 36 100.0 30 .................................... TACTGTGGGCGTGTATATACAGATGAGGAA 494219 36 100.0 30 .................................... TTTAAACGATAGATTTAACTGGGCACTTTT 494285 36 100.0 30 .................................... AGGAGGTCGAGCGGGATGACTTAGTGCTGC 494351 36 100.0 30 .................................... ATATGTTTCGAAGCAAGTAGTGAACCTGTC 494417 36 100.0 30 .................................... TTACAACATTTGAGGAGGAACGATTATGAG 494483 36 100.0 30 .................................... TGTTGGTAAATCGGATAAGCTTCGAGTAGT 494549 36 100.0 30 .................................... AATTGAACTAATAAAGGCGCTAGTGGAGTA 494615 36 100.0 30 .................................... TTTGATAAAGAGGATTTGGCACTATCGAAA 494681 36 100.0 30 .................................... TCGGCAGGCACAGGAGTTTCGAGATACTCA 494747 36 100.0 30 .................................... TGTTCTGGAAGCAGTACGTTGCTCAAGAAT 494813 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 494878 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTACATGTGGAAAATGGTGTTTAAGGACAGGTGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATTTGGATTTTTTAAACTTAAATTTCGAAGTAAACATCGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAGGTTGCTATAAGCGAAGGAGAATTACCATTAAAAGGCGAAGTGCAAAATAACGATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAAAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGACAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 237975-238267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXE010000004.1 Listeria marthii strain FSL L7-0369 NODE_4_length_393862_cov_61.269769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 237975 29 100.0 37 ............................. ACAAGTCCCCAGAATACCCCATATTAGCCCCCATATT 238041 29 100.0 38 ............................. ATGCCAATAAACTCACCATATTTCTTGATGTGTTCACA 238108 29 96.6 36 ..............A.............. AGAGCAACCTGGTCTAAAGCAATAGGTGTCACTTCG 238173 29 96.6 37 ..............A.............. TTCGATGGCTATAACGCACGTTTGCATAAAGGCGAAA 238239 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 98.0 37 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACTGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTCTGTCGACCTTGGGTAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCCAATGCCTATACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATATCAGAACCATGGTATTTAAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 254447-258111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXE010000004.1 Listeria marthii strain FSL L7-0369 NODE_4_length_393862_cov_61.269769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 254447 29 100.0 36 ............................. GAACTTATTAAGTTCTTGAATACATAATAACATATC 254512 29 100.0 36 ............................. TATTATGTTGTCAATCAAAAAATTGTTTTCCTGCCA 254577 29 100.0 35 ............................. CAAACACGATACGTCTATCAAGCATCACTATTCTG 254641 29 100.0 37 ............................. GGAACAGTAGATTATTCAGACCTACAGCAATGCCTTT 254707 29 100.0 35 ............................. AATACCGTAGAATTAGCAGTTACGAGATTTACACA 254771 29 100.0 34 ............................. TTGAACGAAAAGGACATGATCCTTTTGACTTTGA 254834 29 100.0 36 ............................. TACAGTGAAGTGATGTGTGTGTGTGTCGTGCACACC 254899 29 100.0 38 ............................. TCATATCCCCACGCATCTGTTCCAGTGGTGTCGATTAC 254966 29 100.0 38 ............................. AAAGGAGCCGTCCAGTCATCTTTAGAAGTCCATTTTTG 255033 29 100.0 36 ............................. TTGTGTATGTTTCACTAGCTATCACATTTAACGCAT 255098 29 100.0 37 ............................. AAAGACAAACCTAGTGAAATTTTAATCATGGATACCG 255164 29 100.0 37 ............................. AGAGTTTATTAACCTAGCTGGGAAAGATTATAGCCAC 255230 29 100.0 37 ............................. TCTTTAAAATAATTTGTTTGAGAACCGCAATATGTGC 255296 29 100.0 36 ............................. ACCACAACGACGCTTATACAGACAACTTACAGTCAC 255361 29 100.0 34 ............................. CGGGCAATAGTCGATTTTAAAGTATAGATAATCC 255424 29 100.0 39 ............................. ACAAACGCAGATTTGGCAAAAGCTGGAAACTGGGAAAAA 255492 29 100.0 35 ............................. CAATATTCACAGTTTTCTTCTATTTTTTGTTCTCG 255556 29 100.0 35 ............................. CTAGAAGGAGCAAAAATTGAAGTAAGAACTTCTAA 255620 29 100.0 37 ............................. CTTGTATTCTTACGACACTTTAATTCTTGAGGTGGTA 255686 29 100.0 36 ............................. AGATTTACACGGTGTTCTTAAAAAGTTTGGTGGAAA 255751 29 100.0 35 ............................. AAATCTGAAAACAAAAACTACGAATTAGGAACAAG 255815 29 100.0 37 ............................. AAATTTAAAACTGTAGACACTTCTTTGGCAAAATATA 255881 29 100.0 37 ............................. CATAATCAAATACGTTTTGATTGTCCAGTGTTCTTAA 255947 29 100.0 34 ............................. GTTGATGGAATAATTTTAAGTCCGGAAGCAGTAA 256010 29 100.0 38 ............................. AACGATCCAGAATATCAAAAATTAAAAAAATCAATTGA 256077 29 100.0 36 ............................. AAGTCTGATGCTTTTTTTCTTACATTTCACAGTAAG 256142 29 100.0 35 ............................. CGACTTCACAAAAGATAAAATGACCGTCAAGCAGT 256206 29 100.0 37 ............................. CGCATTCTTTTCCTTGAAAACGTCAAAGGGTTATTAT 256272 29 100.0 36 ............................. TGAGTCCTCAACATCTCGGGTCATCAAAGAACTATG 256337 29 100.0 35 ............................. TTTTTTCTGCGCTTTGTTGAACTCGTTTAAATAAA 256401 29 100.0 36 ............................. ATACTTATTGTGTTCGTAAACAAGTAACTCTGAACC 256466 29 100.0 35 ............................. CCTTTCACGCCCCCGACTTGGTTAGCGTGAAAAGG 256530 29 100.0 36 ............................. CTCCTTTTTTCATTTTTTCTAGTTTAATTTGAAACG 256595 29 100.0 34 ............................. ATATTAGTAACTGGGAAAAGAATTACTTACTAGA 256658 29 100.0 36 ............................. ATAGGTATAACTTCTTATATTCGGAACTATTTCAAA 256723 29 100.0 35 ............................. CCAGTATCGGCAAAAAACACAGACGACCTGAAAAA 256787 29 100.0 35 ............................. ATATTTTACATCCAGTAACTTCTTTGTCCCAAATG 256851 29 100.0 34 ............................. CTTGTTTTCGTCTATAAAGATTATAGCTGTTTTA 256914 29 100.0 36 ............................. AGTGAAATCGCAAAGGTCCTTGGCCAGGTCGCTGAA 256979 29 100.0 36 ............................. ATAGCTGGAAGTCTAAGCAGCATGAGGATGGCTCTA 257044 29 100.0 37 ............................. TTAATTACAGAATGTCCGCATCTTTCTGCGTACGAAG 257110 29 100.0 34 ............................. ATCGTAAAAGCACTTGAGCCAATTTATTCATCAG 257173 29 100.0 36 ............................. CCAGTTGGTAGCAAGTGGATGCAAGACACATTAAAG 257238 29 100.0 37 ............................. TATAATACACTGGTAGGCGCGGGGCTTCTATATATAG 257304 29 100.0 36 ............................. TCAGCTAACCAATCTGTACAAGAAGCCTTTGTGTGG 257369 29 100.0 35 ............................. GTAGATTTATTAGAACTTCCGGAAGTTCTATTTTG 257433 29 100.0 35 ............................. CGGGCTTCAAAAAAACAGCAAAGAAGGCAAAAACT 257497 29 100.0 35 ............................. GATTTAGTAAGAGAAGGATTCTATTCTGATATAAA 257561 29 100.0 36 ............................. TTTGGTATCAAACTTTCGAGAATCATTGCTTTTGCA 257626 29 100.0 36 ............................. CCTCTTCAAAACTTCTAATATCAATTTTTTCTATCG 257691 29 100.0 35 ............................. ATGAACCGCAAGACTAACCAAATAGCGGAGTTAGA 257755 29 100.0 37 ............................. TCATATAATCAGTATGCCAAGTTAGATACGACTGTAA 257821 29 100.0 37 ............................. GCAAATGTACAAGCGGCACTATCTAAACTTGCATCAA 257887 29 100.0 37 ............................. TATTTTAGCAAGATCTATTAAGGTGGATATTTCTTCA 257953 29 100.0 36 ............................. GAGATAGTATTTCCTGCTGTTTTTGCTAGACCTGCC 258018 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 258082 29 86.2 0 ...............C......CA....C | C [258104] ========== ====== ====== ====== ============================= ======================================= ================== 57 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCTGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGACTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCAGCTCCAGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //