Array 1 218154-217148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJD010000003.1 Salmonella enterica strain UPMP2115 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218153 29 96.6 32 .........................G... GCCTACGATTTAACAGGCTGGACAATTACGAC 218092 29 96.6 32 .........................G... GAAGCGCCTGGTGCTGTAAACTCTCCCGGGTA 218031 29 96.6 32 .........................G... CGCCTGATTGAATTCGCGGGAATTGCAACCCG 217970 29 96.6 32 .........................G... TTAACTCTTTGCTGGCTCTTACATACGGCGGC 217909 29 96.6 32 .........................G... GAATACCGACGCTTGGTTAAACAGGTAATCCG 217848 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 217787 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 217726 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 217665 29 100.0 32 ............................. CCGTGCGGCCCTATGCCGATGAAAACCACGGA 217604 29 96.6 32 ............................T CCTCCTTTGTCGCCGCATTATTTGGGCAAATC 217543 29 100.0 32 ............................. ATGATCTATGGGCGTGTAGAGATAAAGCGTGT 217482 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 217421 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 217360 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 217299 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 217238 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 217177 29 96.6 0 A............................ | A [217150] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTACGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235392-234449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJD010000003.1 Salmonella enterica strain UPMP2115 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235391 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 235330 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 235269 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 235208 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 235147 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 235086 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 235025 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 234964 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 234903 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 234842 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 234781 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 234720 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 234659 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 234598 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 234537 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 234476 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //